Table 3 Gene ontology enrichment analysis of genes exhibiting homeolog silencing shared by the two accessions of C. arabica analyzed
GO-IDTermCategoryFDRP-ValueTestRefnotAnnotTestnotAnnotRefOver/Under
GO:0043229Intracellular organelleC4.151711E-53.610184E-7133977533898Under
GO:0043226OrganelleC4.151711E-53.610184E-7133977533898Under
GO:0043227Membrane-bounded organelleC7.544177E-51.312031E-6133881533994Under
GO:0043231Intracellular membrane-bounded organelleC7.544177E-51.312031E-6133881533994Under
GO:0005623CellC1.361508E-43.219604E-6245116422759Under
GO:0044464Cell partC1.361508E-43.561238E-6245098422777Under
GO:0044424Intracellular partC1.361508E-44.143721E-6194510473365Under
GO:0034641Cellular nitrogen compound metabolic processP1.882623E-46.944386E-621852646023Under
GO:0005622IntracellularC1.882623E-47.366786E-6214679453196Under
GO:0006725Cellular aromatic compound metabolic processP5.411463E-43.058653E-521720646155Under
GO:1901360Organic cyclic compound metabolic processP5.411463E-43.058653E-521720646155Under
GO:0046483Heterocycle metabolic processP5.411463E-43.058653E-521720646155Under
GO:0006139Nucleobase-containing compound metabolic p.P5.411463E-43.058653E-521720646155Under
GO:0005634NucleusC8.456478E-35.147422E-421413646462Under
GO:0044444Cytoplasmic partC8.769347E-36.260661E-4143281524594Under
GO:0010467Gene expressionP8.769347E-36.331017E-40912666963Under
GO:0003676Nucleic acid bindingF8.769347E-36.481691E-411146656729Under
GO:0034645Cellular macromolecule biosynthetic processP1.039839E-29.925819E-40860667015Under
GO:0044249Cellular biosynthetic processP1.039839E-29.925819E-40860667015Under
GO:0009059Macromolecule biosynthetic processP1.039839E-29.925819E-40860667015Under
GO:0044271Cellular nitrogen compound biosynthetic proc.P1.039839E-29.925819E-40860667015Under
GO:1901576Organic substance biosynthetic processP1.039839E-29.946287E-40861667014Under
GO:0006807Nitrogen compound metabolic processP1.267849E-21.267849E-372175595700Under
GO:0005737CytoplasmC2.685331E-22.802085E-3193719474156Under
GO:0044237Cellular metabolic processP2.979136E-23.238192E-3143065524810Under
  • Analysis was performed using the full set of 9047 analyzed genes as reference group and Fisher’s exact test with a false discovery rate (FDR) correction for multiple testing.