Table 5 Genomic predictive abilities using the One/Group, Group/All, and One/All cross-validation schemes for oil, protein, and seed yield. Data was grouped by genetic cluster.
OilProteinYield
One/GroupGroup/AllOne/AllOne/GroupGroup/AllOne/AllOne/GroupGroup/AllOne/All
ClusterEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.aEst.95% C.I.a
10.34[0.25; 0.42]0.48[0.40; 0.56]0.52[0.44; 0.58]0.40[0.32; 0.48]0.51[0.44; 0.57]0.55[0.49; 0.61]0.35[0.25; 0.46]0.43[0.30; 0.54]0.47[0.36; 0.57]
20.54[0.51; 0.56]0.44[0.41; 0.47]0.54[0.51; 0.57]0.50[0.47; 0.53]0.36[0.32; 0.40]0.50[0.47; 0.53]0.57[0.53; 0.60]0.50[0.45; 0.55]0.58[0.54; 0.62]
30.13[0.00; 0.30]0.32[0.11; 0.51]0.35[0.12; 0.54]0.32[0.17; 0.46]0.28[0.10; 0.45]0.27[0.09; 0.44]0.18[0.01; 0.35]0.27[0.11; 0.43]0.25[0.08; 0.41]
40.41[0.30; 0.51]0.39[0.28; 0.50]0.45[0.35; 0.55]0.34[0.24; 0.43]0.32[0.21; 0.41]0.45[0.35; 0.53]0.44[0.33; 0.54]0.35[0.25; 0.45]0.41[0.31; 0.51]
50.42[0.37; 0.47]0.42[0.37; 0.46]0.48[0.43; 0.52]0.46[0.40; 0.52]0.40[0.35; 0.44]0.51[0.46; 0.55]0.32[0.26; 0.39]0.38[0.31; 0.45]0.44[0.37; 0.50]
60.52[0.49; 0.55]0.38[0.34; 0.42]0.53[0.49; 0.55]0.48[0.45; 0.51]0.30[0.27; 0.34]0.50[0.46; 0.52]0.44[0.40; 0.48]0.35[0.31; 0.39]0.45[0.42; 0.49]
70.45[0.38; 0.51]0.4[0.34; 0.45]0.46[0.39; 0.52]0.40[0.34; 0.46]0.22[0.14; 0.29]0.37[0.30; 0.44]0.43[0.37; 0.49]0.40[0.34; 0.45]0.44[0.38; 0.49]
80.55[0.50; 0.59]0.52[0.48; 0.57]0.58[0.53; 0.62]0.48[0.44; 0.52]0.41[0.38; 0.45]0.52[0.48; 0.55]0.45[0.39; 0.51]0.44[0.38; 0.49]0.49[0.43; 0.54]
90.52[0.48; 0.56]0.38[0.32; 0.43]0.53[0.49; 0.56]0.44[0.40; 0.48]0.24[0.19; 0.30]0.46[0.42; 0.50]0.34[0.29; 0.39]0.22[0.15; 0.28]0.34[0.28; 0.39]
Mean0.430.420.500.420.340.460.390.370.43
  • One/All, leave-one-accession-out within groups; Group/All, leave-one-group-out; One/All, leave-one-accession-out across groups; Est, estimated; C.I., confidence interval.

  • a Obtained by Bootstrapping 10,000 the adjusted phenotypes and predicted values.