Table 1 Gene expression near the im locus in 28-DPA fiber cells by RNAseq
Gene/MarkerPosition Chr. A03TM-1 RPKMim RPKMlog2 (im/TM-1)P-valueTAIR OrthologDescription
CFB588710,257,310Flanking SNP marker
Gh_A03G046810,292,7326.41.5−2.10.024NoneProtoheme IX farnesyltransferase
Gh_A03G046910,294,2221.21.40.20.052AT5G50580SUMO-activating enzyme 1B
Gh_A03G047310,352,8041.51.3−0.20.752AT3G26890None
Gh_A03G047510,381,6593.12.9−0.10.685AT4G00650FRIGIDA-like protein
Gh_A03G048010,491,4901.41.2−0.20.840AT5G51050Mitochondrial substrate carrier family protein
Gh_A03G048310,599,6663.02.3−0.40.193AT5G51020CRUMPLED LEAF
Gh_A03G048410,616,90316.815.9−0.10.660AT1G01630Sec14p-like phosphatidylinositol transfer protein
CFB588810,999,373Flanking SNP marker
Gh_A03G048911,022,6702.41.0−1.30.164AT1G64580Pentatricopeptide repeat (PPR) protein, mitochondrial
CFBid000111,025,170im-Linked 22-bp deletion in exon of PPR
Gh_A03G049111,449,87212.79.6−0.40.192AT5G50920Chaperone protein ClpC, chloroplastic
Gh_A03G049211,458,1094.04.30.10.139AT2G42490Copper methylamine oxidase
Gh_A03G049311,495,86729.626.1−0.20.933AT4G24690NBR1, a selective autophagy substrate
Gh_A03G049511,523,8842.91.8−0.70.676NoneNone
Gh_A03G049611,525,1621.10.3−1.90.126AT4G24700None
Gh_A03G049811,626,20314.313.5−0.10.457AT4G20360RAB GTPase homolog E1B
Gh_A03G050011,796,3701.71.90.20.529AT5G62350Pectin methylesterase inhibitor superfamily protein
CFBid000212,155,364Flanking deletion marker
Gh_A03G050612,155,6240.00.01.60.559AT1G12260NAC 007
  • Only annotated proteins with >1 RPKM and a select cell wall gene are presented. Nearby marker locations are indicated