Table 4 Statistics of contig and mean contig length per sample obtained for two restriction enzyme combinations (PM = PstI + MspI; HH = HinfI + HpyCH4IV) in combined runs of 12 Arabidopsis and 12 rice samples
PMHH
SampleContig CountMean LengthContig CountMean LengthLength Ratioa
Arabidopsis
 Bur-059,354204120,6022082.1
 Col-079,750199154,3772062.0
 Col-125,86519889,1982153.8
 Col-224,64720184,1602173.7
 Col-325,891200109,7422184.6
 Col-462,244202134,1192122.3
 Col-527,32520199,3772234.0
 Col-635,066200105,8372163.3
 Col-738,72520395,4512192.7
 LER73,058197131,1692131.9
 Tsu-175,930198123,2562101.7
 WS463,640199113,1022141.9
 Mean49,291200113,3662142.8
Rice
 R16366,984220176,3232132.5
 R23763,211223206,9162143.1
 R24262,994221220,6992093.3
 R28664,506221158,0902102.3
 R42361,157219181,8262122.9
 R61470,942213176,4412102.4
 R73556,315209140,5802052.4
 R97173,663221199,2192112.6
 R112063,652220146,5692112.2
 R140958,519220170,7062092.8
 R157069,318218166,9832112.3
 R1662b5690246164,09821425.0
 Mean64,660219176,7592102.6
  • a Length ratio, the ratio of the total base pairs obtained for HH over those for PM.

  • b Rice sample R1662 had a sequencing issue with PM and was excluded from the mean calculations.