Table 2 Genome assembly statistics for Hmel1.1, Hmel2, and other published Lepidopteran genomes
Hmel1.1Hmel2Bombyx moriDanaus plexippusLerema acciusMelitaea cinxiaPapilio glaucusPapilio polytesPapilio xuthusPlutella xylostella
Scaffolds430979543,462539729,988826168,029387355721819
Total length (bp)273,786,188275,198,613481,803,763248,564,116298,173,436389,907,520375,987,417227,005,758243,890,167394,062,517
Mean scaffold size (bp)63,538346,16111,08546,055994347,198552658,61243,770216,636
Maximum scaffold size (bp)1,451,4269,352,98316,203,8126,243,2183,082,282668,4731,977,2359,881,03216,292,3443,493,687
Scaffold N50 length (bp)194,3022,102,7204,008,358715,606525,349119,328230,2993,672,2636,198,915737,182
Scaffold N90 length (bp)38,051273,11161,147160,49960,30829,5982022930,396533,617152,088
Scaffold N95 length (bp)21,864124,79892868,064191316,097945417,439160,47872,492
Scaffold N50 number34534381011609704212116155
Scaffold N90 number1634176258366689339675896348575
Scaffold N95 number210525156794833385426321,0378191753
Contigs11,607310587,97210,54552,98545,61896,53213,44110,48315,764
Mean contig size (bp)23,23188,314490722,93954667914375416,23922,69724,557
Contig N50 length51,611330,03715,765113,90318,01815,00312,95851,561133,77959,184
Gaps7298231044,510514822,99737,35728,5039568491113,945
Total gap length (bp)4,132,701981,61250,083,5696,664,2768,535,70528,877,73213,599,0678,725,5225,949,7046,937,203
Gap %1.50.410.42.72.97.43.63.82.41.8
Complete BUSCOs %81.685.575.587.177.755.875.876.784.275.0
Duplicated BUSCOs %2.93.12.23.62.71.72.72.53.120.4
Fragmented BUSCOs %11.19.516.110.113.920.614.612.38.311.8
Missing BUSCOs %7.35.08.42.88.423.69.611.07.513.2
  • See Table 1 legend for definitions of N50 length and number. BUSCO (Benchmarking Universal Single-Copy Ortholog) values are based on a set of 2675 arthropod BUSCOs (Simão et al. 2015). Complete and duplicated BUSCOs are included in the count of complete single-copy BUSCOs. See Materials and Methods for details of genomes and calculation of statistics.