Table 4 Repetitive elements in the Magnaporthaceae
M. oryzaeM. poaeG. graminis var. tritici
Total Length, bpRepetitive Content, %Genome, %Total Length, bpRepetitive Content, %Genome, %Total Length, bpRepetitive Content, %Genome, %
Class I (retrotransposon)
 LTR/Gypsy179004143.084.3614222132.830.36131740144.993.02
 LTR/Copia3757439.040.9252930818.081.21
 Unknown2120695.100.52
 Subtotal237785357.235.8014222132.830.36184670963.074.23
Non-LTR retrotransposons
 LINE/Tad169046316.621.6834229311.690.78
 Unknown1355503.260.3317668140.780.45136050.460.03
Subtotal82601319.882.0117668140.780.4535589812.160.82
Class II (DNA tranpsosons)
 DNA/TcMar-Fot151433612.381.25194064.480.051578415.390.36
 DNA/PIF-Harbinger183020.630.04
 DNA/hAT-Ac171240.580.04
 Unknown3060177.360.7571391.650.02
 Subtotal82035319.742.00265456.130.071932676.600.44
Other
 Unknown1310473.150.328779420.260.2253203418.171.22
Total415526610.134332411.1029279086.71
  • Repetitive elements were collapsed into parent families and classified by RECON. BLASTx was used to confirm classification. Unclassified families were further analyzed for TIRs and LTRs using EINVERTED and POLYDOT, respectively. LTRs, Long terminal repeats; TIRs, terminal inverted repeats.