Table 1 Number of SNPs retained after filtering steps during the analysis of 32,720 Mbp of 121-bp Illumina paired-end sequence of genomic DNA of 17 common bean genotypes
FiltersNumber of SNPs Retained
Polymorphic among 17 common bean varieties1,857,237
Elimination of SNPs residing within 25 nt of another SNP1,232,064
Elimination of SNPs with A/T or G/C alleles993,237
Elimination of SNPs with N in the 60-nt regions flanking the SNP992,682
  • SNP, single-nucleotide polymorphism.