Table 2 Informative SNPs for performing GWAS in the Hybrid Mouse Diversity panel
Prior GenotypesMouse Diversity Array Genotypes
Total high-quality SNPs∼140,000∼550,000
More than 10% missing values∼9,000∼200
MAF less than 5%∼24,000∼347,300
Final informative SNPs∼108,500∼202,500
  • A comparison of the number of SNPs in both the Prior and MDA genotypes, their reasons for removal and the final number of informative SNPs in each set. SNP, single-nucleotide polymorphism; GWAS, genome-wide association studies; MAF, minor allele frequency.