Table 1 Genes associated with carbohydrate-active enzyme (CAZy) activity in the set of overexpressed genes in yeast or mycelial phase in Ophiostoma novo-ulmi
Growth PhaseO. novo-ulmi GenesOverexpression (logFCa Y vs. LM)Overexpression (logFC Y vs. SM)DescriptionCAZyb
YeastOphioH327g33683.152.65Mannan endo-1,6-alpha-mannosidase DCW1GH76
OphioH327g09282.652.94Alpha-L-fucosidaseGH29
OphioH327g02771.741.16Glycoside hydrolase 15-relatedGH15
OphioH327g05472.414.421.4-beta-D-glucan cellobiohydrolase CGH6
OphioH327g10701.380.92Protein phosphatase regulatory subunitCBM21
OphioH327g56731.280.98Mannan endo-1.6-alpha-mannosidase DCW1 (Defective cell wall 1)GH76
OphioH327g41751.551.95Endochitinase 2GH18
OphioH327g82251.551.59Chitin synthase D (GT2 family)GT2
OphioH327g20681.783.19Xylosidase/arabinosidase (Beta-xylosidase)GH43
OphioH327g06473.653.6Exoglucanase 1GH7
OphioH327g60630.940.91UDP-N-acetylglucosaminyltransferaseGT41
MyceliumOphioH327g06352.893.18GDSL-like Lipase/AcylhydrolaseCE12
OphioH327g33831.881.20Carbohydrate-binding module family 52 proteinCBM52
OphioH327g70701.811.60Endochitinase 1 (Complement-fixation antigen)GH18
OphioH327g62131.421.48Glycosyltransferase family 22 proteinGT22
OphioH327g73704.603.68Endo-N-acetyl-beta-D-glucosaminidaseGH18
OphioH327g4365.11.381.30Chitin synthase 3GT2
OphioH327g32851.301.64Protein mannosyltransferase 1GT39
OphioH327g68641.411.66Beta-glucanosyltransferase gel2GH72
OphioH327g72513.663.85Putative cellulose synthase 3 (Cyclic di-GMP-binding domain)GT2
OphioH327g55904.865.79RhamnogalacturonaseGH28
OphioH327g82801.241.42UDP-glucose:glycoprotein glucosyltransferaseGT24
OphioH327g50971.101.20Dolichol-phosphate mannosyltransferaseGT2
OphioH327g23580.901.39Oligosaccharyl transferase subunitGT66
OphioH327g34471.731.99EGF domain-specific O-linked N-acetylglucosamine transferaseGT61
OphioH327g44500.911.03Mannosyltransferase pmtiGT39
OphioH327g09700.931.24Chitin synthase 1 (Class-III chitin synthase 3)GT2
  • a LogFC, log2 of fold change between yeast and mycelium phases; Y, yeast phase; LM, mycelium grown in liquid medium; SM, mycelium grown in Petri dishes. FDR ≤1%.

  • b GH, glycoside hydrolases; GT, glycosyltransferases; CBM, carbohydrate-binding module. Numbers associated with CAZy types refer to the family number.