Table 1 Design of Agilent microarray containing 177,440 features
CategoryDescriptionProbe IDsCount
ETS Core VariantsCCGGA—–CG—(65,536)1–65,53665,536
GCGGA—–CG—(65,536)65,537–131,07265,536
ETS↔CRE SNPsETS↔CRE CC motif:CCGGAAGTGACGTCAC × 40131,073–131,11240
ETS↔CRE CC motif SNPs: 1-bp variants (SNPs) of CCGGAAGTGACGTCAC (3*16) × 40131,113–133,0321920
ETS↔CRE GC motif: ETS-CRE motif (GCGGAAGTGACGTCAC × 40)133,033–133,07240
ETS↔CRE GC motif SNPs: 1-bp variants (SNPs) of GCGGAAGTGACGTCAC (3*16) × 40133,073–134,9921920
Genomic OccurrencesAll unique 36-mer with CCGGA—–CG extracted from mouse (UCSC mm9)134,993–150,15215,160
All unique 36-mer with GCGGA—–CG extracted from mouse (UCSC mm9)150,153–163,39113,239
Randomly selected unique 36-mer with CCGGA—–CG extracted from human (UCSC hg19)163,392–170,3917000
Randomly selected unique 36-mer with GCGGA—–CG extracted from human (UCSC hg19)170,392–177,4407049