Table 3 Results of a genome scan for morphological QTL using multiple QTL models (MQM) based on the approach of Arends et al. (2010)
TraitLOD*LGpos (cM)Closest MarkerInterval (cM)Phenotypic Score by HaplotypeAddDomPVE (%)
Lf/LfLf/TrcTrc/Trc
RW17.52715c100.56303812.9–24.7−0.00754−0.002590.01265−0.00982−0.0041215.2
4.54315c209.4501335.0–23.5−0.00698−0.000080.00606−0.006520.000429.5
4.11160c96.185530.0–60.8−0.00615−0.001050.01124−0.00870−0.003078.6
RW29.2675c193.9874620.0–35.0−0.00914−0.000940.01037−0.00976−0.0010918.4
RW35.42780c89.77808479.5–86.20.00548−0.003730.000020.00273−0.0046111.2
4.3832260c259.8915420.0–61.2−0.00075−0.001340.00309−0.00192−0.001849.2
4.383145c158.6200011.3–11.9−0.005460.00309−0.00108−0.002190.004829.2
3.591535c18.403845234.9–40.40.00306−0.002700.000500.00128−0.003137.6
9.12210.15c22.66224540.0–5.0−0.00365−0.002010.00582−0.00474−0.0020918.1
3.967195c162.9569700.9–16.50.00400−0.00263−0.001210.00260−0.002718.3
RW43.911330c62.312966610.0–45.00.00598−0.00267−0.00190.003938−0.003388.2
RW55.26425c61.323604217.4–30.00.00633−0.00141−0.001060.00369−0.0033410.9
4.05250c11.41081230.0–52.70.005210.00023−0.003850.00453−0.000568.5
DF1 (sex)23.19730c0.507170624.7–30.0−1.290410.116931.50014−2.040480.3986539.9
4.5511100c207.45036190.0–105.10.41163−0.06853−0.067840.239740.095049.5
5.441563.8c74.20021825.0–63.80.331200.23140−0.974300.652750.1123611.2
  • The effect of alleles on the traits (relative warp scores) are given. All LOD scores exceed the genome-wide 95% C.I. as determined by 1000 permutations of the data. RW, relative warp; DF1, discriminant function axis 1, which distinguishes F2 sexes; LG, linkage group; pos, position (cM); Add, additive effects; Dom, dominance effect; PVE, percent variance explained.