Table 4 Allele frequencies of significantly associated SNPs for overall combined, Manhattan combined, and Ottawa environments in the four major subpopulations
ChromosomeSNP Physical Position (bp)Resistant AlleleAllele Frequency (%)PN
CADDURGUIKAFCADDURGUIKAF
Overall combined
957816733G41.227.89.50.03.01E-0451362124
957222599G35.316.79.520.81.29E-0151362124
Manhattan combined
957272115G60.897.266.770.88.12E-0451362124
755702883G72.68.30.00.02.20E-1651362124
264623580A37.366.79.58.31.41E-0751362124
260129082T11.736.171.458.34.00E-0651362124
758532122A5.922.24.84.24.22E-0251362124
957231207C13.70.09.50.01.33E-0251362124
227851064G2.069.485.712.52.20E-1651362124
Ottawa
38738404G9.82.80.08.32.55E-0446342124
956646280A39.219.928.537.59.99E-0344342124
465815798C0.027.80.00.01.53E-0650332124
851279094T27.469.452.44.05.41E-0844292124
839230116A0.030.60.00.05.41E-0847362124
  • SNP, single nucleotide polymorphism; N, total number of lines within each subpopulation; CAD, caudatum; DUR, durra; GUI, guinea; KAF, kafir.