Table 2 Results of quantitative real-time PCR analyses of the 17 confirmed CNVRs
CNVRChromosomeStartaEndaTypeFrequencyPrimerPositive SamplesNegative Samples
Sample No.Sample ConfirmedPositive Predictive RateSample No.Samples ConfirmedNegative Predictive Rate
431284433601284517960Loss91.67CGH1-111111.0000111.0000
Gene2-211111.0000111.0000
471296124751296565810Loss75E1-2930.3333200.0000
72102221599123388810Loss58.33LD1-2771.0000530.6000
LD1-3771.0000530.6000
105116269181062798160Gain100F1-212121.000000
F1-312121.000000
108116297756062993310Loss16.67RD2B-4221.00001020.2000
114117056225171910060Both66.67J1-3881.0000410.2500
152133420735134233930Loss91.67CGH3-111111.0000111.0000
Gene9-411111.0000111.0000
33926135075161455330Loss16.67R1-3221.00001070.7000
41839598050195990220Gain100CGH7-112121.000000
CGH7-312121.000000
441455012515544300Loss16.67D1221.00001060.6000
D5210.50001000.0000
46449964179199708810Gain58.33F2760.8571520.4000
F4760.8571510.2000
57972462175124759180Gain58.33RD14A-2771.0000530.6000
RD14B-2740.5714500.0000
58875030196150677050Loss16.67D1-1210.50001100.0000
D2-1210.50001100.0000
62084330179143891650Gain16.67CGH2-1221.00001000.0000
kit6221.00001000.0000
65992923113129275230Gain8.33K5111.00001000.0000
734X9133668191353210Loss66.67CGH6A-2881.0000420.5000
CGH5B-1881.0000420.5000
736X9258342192609190Loss25R2-2331.0000860.7500
Average0.89710.4125