Table 1 Number of all SNPs, all indels, and coding SNPs + indels distinguishing each pair of substrains are compared with an approximate number of years since separation (exome sequencing only)
All SNPAll Indels
BomTacMrkTacShiJclShiLtDvsShiLtBomTacMrkTacShiJclShiLtDvsShiLt
BomTac079808685022292226
MrkTac790817473220252630
ShiJcl808108988292503127
ShiLtDvs867489037222631018
ShiLt857388370263027180
Coding SNP + IndelsYears Since Separation (Approx.)
BomTacMrkTacShiJclShiLtDvsShiLtBomTacMrkTacShiJclShiLtDvsShiLt
BomTac033332533028272727
MrkTac330302230280282828
ShiJcl333002432272802727
ShiLtDvs252224014272827019
ShiLt333032140272827190
  • SNP, single-nucleotide polymorphism.