Table 2 SNPs significantly associated with variation in nutritional indices at P < 10−6
NIDietSNPPEffectMAFGeneFBgnTypeFunctionReference
GlucoseHGD3L.48115854.83E-07−0.0200.394Dhc64CFBgn0051025Syn.CellularizationPapoulas et al. 2005
3R.64048173.41E-07−0.0220.222hthFBgn0001235IntronBrain developmentNagao et al. 2000
3R.239988289.64E-07−0.0210.307CG34354FBgn0085383IntronNucleic acid bindingTweedie et al. 2009
LGDNANANANANANANANANA
Pooled3R.62908818.25E-07−0.0230.075NANANANANA
3R.64048171.35E-07−0.0150.226hthFBgn0001235IntronBrain developmentNagao et al. 2000
3R.64404089.67E-07−0.0160.176hthFBgn0001235IntronBrain developmentNagao et al. 2000
3R.64463148.68E-07−0.0160.179hthFBgn0001235IntronBrain developmentNagao et al. 2000
3R.64558183.57E-08−0.0180.154hthFBgn0001235IntronBrain developmentNagao et al. 2000
GlycerolHGD2R.187266425.41E-070.0140.297CG9825FBgn0034783Syn.Transmembrane transportTweedie et al. 2009
LGDX.65411164.83E-070.0130.224pigFBgn0029881IntronSmall bodyTweedie et al. 2009
X.65411382.35E-070.0140.229pigFBgn0029881IntronSmall bodyTweedie et al. 2009
X.65411557.14E-070.0130.229pigFBgn0029881IntronSmall bodyTweedie et al. 2009
X.65412152.24E-070.0140.215pigFBgn0029881IntronSmall bodyTweedie et al. 2009
Pooled2L.3074231.16E-07−0.0160.141Plc21CFBgn0004611IntronLipid catabolic processTweedie et al. 2009
3L.115087847.70E-070.0110.353CG7512FBgn0036168IntronMetal ion bindingTweedie et al. 2009
3R.144536861.54E-07−0.0100.482QinFBgn0263974IntronProtein autoubiquinationTweedie et al. 2009
GlycogenHGD2R.76734844.56E-07−0.0230.210thsFBgn0033652IntronFibroblast growth factor bindingItoh and Ornitz 2004
2R.175982852.15E-070.0210.328CG30403FBgn0050403IntronDNA bindingTweedie et al. 2009
2R.175982852.14E-070.0210.338CG30403FBgn0050403IntronDNA bindingTweedie et al. 2009
LGD2L.83161164.93E-07−0.0220.073CG7806FBgn0032018Syn.Transmembrane transportTweedie et al. 2009
Pooled2L.113977324.66E-07−0.0230.217NANANANANA
Mean weightHGDNANANANANANANANANA
LGD2L.32613436.08E-0756.10.321NANANANANA
2L.32716977.11E-0753.60.420CG3347FBgn00315133′ UTRZinc ion bindingTweedie et al. 2009
3R.259487947.31E-0760.90.239CG45072FBgn0266442Nonsyn.UnknownNA
3R.259488128.9E-0760.10.245CG45072FBgn02664425′ UTRUnknownNA
3R.259528304.90E-0984.30.150Ppi1FBgn0051025Nonsyn.Protein phosphatase inhibitorBennett et al. 2006
3R.259529661.37E-0883.20.143Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
3R.259530109.67E-0978.50.169Ppi1FBgn0051025Nonsyn.Protein phosphatase inhibitorBennett et al. 2006
3R.259531045.00E-0984.10.152Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
3R.259532032.30E-0876.40.155Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
3R.259533054.36E-0876.90.161Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
Pooled3R.259528302.90E-0873.90.148Ppi1FBgn0051025Nonsyn.Protein phosphatase inhibitorBennett et al. 2006
3R.259529661.21E-0771.50.141Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
3R.259530103.49E-0765.10.168Ppi1FBgn0051025Nonsyn.Protein phosphatase inhibitorBennett et al. 2006
3R.259531045.44E-0872.30.150Ppi1FBgn0051025Syn.Protein phosphatase inhibitorBennett et al. 2006
X.58776265.01E-07−48.30.423GripFBgn0029830IntronGlutamate receptor binding; muscle attachmentSwan et al. 2004
ProteinHGDNANANANANANANANANA
LGD2L.18884906.48E-07−0.0160.298CG7337FBgn0031374IntronQuinonprotein alcohol dehydrogenase activityTweedie et al. 2009
2L.70084952.62E-07−0.0210.149uifFBgn00318795′ UTRNotch bindingTweedie et al. 2009
3R.43704377.68E-07−0.0200.145NANANANANA
3R.157718727.28E-07−0.0180.216Hs6stFBgn0038755IntronSulfotransferaseGhabrial et al. 2003
Protein (cont.)3R.183252762.41E-07−0.0230.140oa2FBgn0038980IntronOctopamine receptor activityBalfanz et al. 2005
Pooled2R.176481806.69E-07−0.0130.512NANANANANA
3L.61317525.82E-070.0120.482Cpr65AvFBgn0052405Down (571)Insect cuticle proteinKarouzou et al. 2007
Lcp65AeFBgn0020640Up (534)Insect cuticle proteinKarouzou et al. 2007
TriglyceridesHGDX.204111243.85E-07−0.0200.222RunxBFBgn0259162IntronCellular processBoutros et al. 2004
LGD2L.49055188.54E-070.0250.353CG2837FBgn0031646IntronUnknownNA
2R.150642569.66E-07−0.0250.331CG10737FBgn0034420IntronIntracellular signal transductionTweedie et al. 2009
X.54454294.50E-070.0330.188Vsx2FBgn0263512IntronDNA bindingTweedie et al. 2009
PooledNANANANANANANANANA
  • Effect, effect size of minor allele; SNPs labeled NA are not within 1000 bp of an annotated gene. Lines with all NAs indicate no SNPs met significance threshold; MAF, minor allele frequency.