Table 1 RNA-seq datasets used in this study
SourcePlatformSamplesLengthExperimentReference
Drosophila ovariesIllumina2435RIP-seqLu et al. 2014
Drosophila embryos 0–24 hrSOLiD1250Ribo(−)Graveley et al. 2011
Drosophila S2 cellsIllumina645, 50Ribo(−)Smith et al. 2011
Drosophila 3rd instar larvaeIllumina248Ribo(−)Garcia et al., unpublished data
Drosophila pharate adultsIllumina448Ribo(−)Lu and Matera 2014
Mouse ES cellsSOLiD148Ribo(−)Liu et al. 2011
Mouse differentiated ES cellsIllumina1251Ribo(−)Huang et al. 2011
Mouse fetal headIllumina1051Ribo(−)Huang et al. 2011
Mouse cerebrumSOLiD233Ribo(−)Liu et al. 2011
Mouse testisSOLiD233Ribo(−)Liu et al. 2011
  • Ribo(−) indicates an RNA-seq experiment in which the ribosomal RNAs are depleted from the total RNA samples.