Table 2 Summary of RNA-Seq data obtained from B. rapa deep transcriptome using Illumina GAIIx sequencing

Pool Name/Run	Pool Number	No. of Tissues	Total No. of Reads	Fastq File Size (in GB)	Total No. of Reads After Quality Control	Average Read Length (bp)
s_6_1	1	66	218,642,024	58	162,403,886	100
s_7_1	2	60	193,176,106	50	148,346,164	100
GH_s_1	1	60	184,259,308	48	162,260,599	89
GH_s_2	1	60	181,519,358	48	160,143,988	89
GH_s_3	1	60	180,575,544	48	159,927,822	100
GC_s_1	2	66	218,352,856	56	183,452,891	100
GC_s_2	2	66	213,474,480	56	172,832,712	100
GC_s_3	2	66	96,917,806	26	75,331,287	100
GC_s_4	2	66	212,749,370	56	180,334,866	100
GC_s_5	2	66	223,341,414	60	144,237,478	100
GC_s_6	2	66	201,966,154	54	135,778,620	100
GC_s_7	2	66	201,305,348	54	142,418,270	100
GH_s_4	1	60	166,999,240	44	117,413,176	100
GH_s_5	1	60	213,801,168	58	136,508,912	100
GH_s_6	1	60	216,036,902	58	142,306,342	100
GH_s_7	1	60	203,973,230	54	136,831,614	100
GCGH_s_1	R	8	226,938,148	60	189,740,545	100
Total			3,354,028,456	888	2,550,269,172	98.7

Pool 1 includes all 66 different tissues collected from growth chamber. Pool 2 includes all 60 different tissues collected from greenhouse and field. Pool R includes all eight tissues that failed in pool 1 and pool 2.