Table 4 The 37 SNPs significant for TMAX rate in at least one of the nine MTMM models
SNPDark/LowDark/ HighFull-Light/LowFull-Light/HighFullGenotype OnlyG×EG×LG×N
Chr1:27571640.0100.0524.66E−053.35E−06a2.51E−052.86E−040.0040.0110.069
Chr1:27630160.1910.1128.86E−057.26E−06a4.43E−054.40E−040.0050.0020.607
Chr1:27650470.0210.0104.17E−08b6.62E−09b1.76E−07b2.38E−060.0020.0010.443
Chr1:27703500.0090.0035.56E−06a1.03E−041.76E−045.04E−050.1710.2740.161
Chr1:40581550.0130.0094.68E−06a0.0130.0010.0030.0240.3950.012
Chr1:104190173.63E−050.0011.17E−043.63E−06a1.50E−042.84E−050.2490.3440.206
Chr1:185266641.28E−06a4.89E−050.0022.38E−041.50E−042.70E−050.2620.2470.202
Chr1:217135820.0250.0171.53E−07b1.03E−05a1.63E−059.06E−050.0080.0110.133
Chr1:219160272.13E−040.0013.60E−043.10E−06a2.85E−042.00E−050.6800.4150.817
Chr1:234949371.77E−06a5.49E−050.0027.55E−041.13E−046.22E−050.0880.2470.047
Chr1:276685611.43E−06a2.19E−051.55E−06a1.86E−06a5.32E−066.94E−070.2670.9620.108
Chr1:293683670.0090.0050.0029.67E−06a2.74E−044.01E−050.3370.2780.267
Chr2:63518970.0170.0321.40E−043.84E−06a2.93E−043.99E−040.0420.0120.779
Chr2:89604472.37E−053.81E−057.38E−054.44E−06a3.24E−051.73E−060.7240.9430.431
Chr2:102971880.0280.0191.27E−06a7.48E−046.29E−040.0010.0300.0540.104
Chr2:176206110.1490.1025.33E−06a7.99E−06a6.74E−055.09E−040.0070.0020.980
Chr3:47865050.0840.0245.79E−06a2.05E−048.96E−047.93E−040.0720.0240.859
Chr3:55866490.0160.0119.14E−06a3.90E−040.0020.0020.0970.0460.552
Chr3:121623710.0170.0135.28E−06a2.27E−047.42E−045.80E−040.0790.0710.249
Chr3:121631160.0030.0022.36E−07b2.14E−051.05E−043.11E−050.1570.1500.263
Chr3:135307620.3640.2110.0041.02E−05a8.30E−050.0010.0040.0030.063
Chr3:177189050.0250.0200.0013.54E−06a2.54E−042.34E−040.0590.0280.258
Chr3:218188820.0010.0070.0024.30E−08b7.48E−051.75E−050.1900.0880.414
Chr4:72878000.5960.3791.45E−057.79E−06a8.51E−060.0022.21E−044.20E−050.523
Chr4:76575830.0660.1877.61E−052.77E−07b1.97E−054.04E−040.0025.92E−040.956
Chr4:88411310.0760.0162.38E−06a3.91E−051.23E−043.84E−040.0180.0050.890
Chr4:88430140.0060.0051.24E−051.01E−05a1.05E−043.85E−050.1280.0980.326
Chr4:88431500.1980.0265.17E−06a1.92E−043.15E−043.51E−040.0510.0180.720
Chr4:127767090.0090.0480.0012.45E−06a3.22E−041.75E−040.1000.0720.316
Chr5:46906320.0110.0026.20E−06a0.0010.0030.0010.3030.2070.453
Chr5:107239031.07E−07b7.86E−060.0060.0085.83E−051.90E−040.0160.0220.045
Chr5:164250240.0080.0013.13E−06a0.0010.0013.54E−040.1610.2200.186
Chr5:224427250.0010.0057.81E−057.61E−06a2.94E−047.22E−050.2090.1970.283
Chr5:263933360.0020.0049.82E−053.14E−06a2.21E−045.27E−050.2080.0880.771
Chr5:264991480.0560.0472.52E−06a0.0020.0010.0030.0180.0580.056
Chr5:266278730.0050.0089.43E−053.71E−06a3.05E−047.91E−050.2000.0830.767
Chr5:266283680.0510.0123.05E−06a2.20E−051.36E−047.86E−050.0860.0330.725
  • Raw P values are shown for each SNP in each model. SNPs in bold are also significant F-SNPs at the 0.1 level.

  • a 0.05 < P ≤ 0.1 after a B-H FDR correction.

  • b P ≤ 0.05.