Table 1 Genes identified as positive
GeneRNAi Stock Number
alan shepardaVDRC 37863, NIG 32423R-2
arrestaVDRC 107459
bancalbVDRC 105271
brain tumorcVDRC 105054, TRiP HMS01121
CG3056aVDRC 101781
CG4119aNIG 4119R-2
CG4887aVDRC 105322, NIG 4887R-3
CG5168cVDRC 110451
CG5439aNIG 5439-R1
CG5589dVDRC 108642
CG5705eVDRC 108376
CG5800bVDRC 103769
CG6418bVDRC 108552
CG6961aVDRC 109951, NIG 6961R-3
CG7082bVDRC 103708
CG7903aVDRC 106475, NIG 7903R-1
CG9107aVDRC 109500
CG10466aVDRC 104715
CG10777dVDRC 109465
CG11266aNIG 11266-R2
CG11334eVDRC 109672
CG11454aNIG 11454R-4
CG11505aVDRC 105949, NIG 11505R-2
CG11726aNIG 11726-R1
CG12493fVDRC 102360
CG14718a,cVDRC 105543
CG14891aVDRC 102118
CG18259aVDRC 50094
CG32706aVDRC 109212
CG34354aVDRC 102597
CG40351aVDRC 40683
cyclophilin-33aVDRC 108734
Dbp73DdVDRC 108310
Ddx1dVDRC 103365
Dicer-1aVDRC 106041
Dicer-2d,fTRiP 02636
Disco Interacting Protein-1fVDRC 108186
DroshafVDRC 108026
eEF1deltaeVDRC 107007
Ef1alpha48DeVDRC 104502
Ef1alpha100EeVDRC 102736
Ef1betaeVDRC 106636
EfseceVDRC 105437
4EHPeVDRC 38399
eIF-1Ae,gVDRC 100611
eIF-2alphae,gVDRC 104562
eIF-2betac,eVDRC 105291
eIF2B-deltaeVDRC 104403
eIF2B-epsiloneVDRC 34711
eIF2B-gammaeVDRC 108083
eIF3-S2 (Trip1)eVDRC 103141
eIF3-S4 (CG8636, CG10881)a,c,eVDRC 105325
eIF3-S5eVDRC 101465
eIF3-S8eVDRC 26664
eIF3-S9aVDRC 107829
eIF-3p40eVDRC 106189
eIF-4AdVDRC 100310
eIF4E-4eVDRC 107595
embryonic lethal abnormal visionaVDRC 37915, TRiP JF03008
eRF1eVDRC 45027
found in neuronsaVDRC 101508
fusilliaVDRC 107575
Gemin3dVDRC 49506
glorundaVDRC 27752, NIG 6946R-1
Gr98daVDRC 106079
helicase at 25EdVDRC 104481
lethal(2)35DfdVDRC 108847
loquaciousfVDRC 108358
maskbVDRC 103411
mind bomb 2cVDRC 108947
mtEF-TseVDRC 103791
muscleblindcVDRC 105486
nanoscMenon et al. (2009)
oo18 RNA-binding proteinVDRC 106257, NIG 10868R-1
oskarVDRC 107546
pitchounedVDRC 106078
rasputinaVDRC 109911
Ribosomal protein S3b,eVDRC 10321
rumpaVDRC 44659
SF2aVDRC 27776
second mitotic wave missinga,cVDRC 105950
smaugNIG 5263R-2
smoothaVDRC 108351
sans filleaVDRC 104334
SpargelaVDRC 103355
spoonbill (yu)bVDRC 105107
squidaVDRC 32395
Srp54aVDRC 51088
U2 snRNP auxiliary factor 38cVDRC 110075
x16a,cVDRC 100226
  • Positive candidates, including three positive control genes, are listed by their annotated gene name (FlyBase) or CG number where no name has been assigned. The protein eIF3-S4 is encoded by two identical genes. Thus, UAS-RNAi lines available for each one target the other. High throughput expression analysis (FlyAtlas Anatomical Expression Data, modENCODE Tissue Expression Data) shows CG8636 is ubiquitously expressed at high levels throughout development whereas CG10881 expression is largely restricted to testis, larval imaginal discs, fat body, and accessory gland. Thus, we suspect that the dendritic phenotype is due to knockdown of CG8638. Canonical RNA-binding motifs found in each protein are indicated as: a RNA recognition motif; b hnRNP K homology domain; c zinc finger; d DExH/D box; e translation factors; f double-stranded RNA-binding domain; g S1 RNAbinding domain. Translation factors are indicated by #. Homologs for genes listed are shown in Table S2.