Table 1 Description of common core-region haplotypes defined using 16 SNPs
HaplotypePolymorphism
SNP IDrs1834640rs2675345rs2469592rs2470101rs938505rs2433354rs2459391rs2433356rs2675347rs2675348rs1426654rs2470102rs16960631rs2675349rs3817315rs7163587
Nicknamec1c2c3c4c5c6c7c8c9c10c11c12c13c14c15c16
Ancestral stateGGGCCTGAGGGGAGTT
C1
C2T
C3AT
C4T
C5ATAC
C6ATAGC
C7ATAGGC
C8ATCAGAACC
C9ATCAGAAACC
C10AATCAGAAAACC
C11AAATCAGAAAAACC
  • Only differences from ancestral allele are shown. Rare core-region haplotypes (omitted here) are tabulated in Table S3.