Table 2 QTL from At and Dt tetraploid chromosomes with their consensus locations and markers on the D genome and WGMM
At & Dt Chr.No. QTLD Chr.Start bpEnd bpNo. MarkersQTL traitsQTL names
7;164D0117,773,02845,685,2921,433FF;FL;FU;MICFU16.1(FLU);FL16.1;FF16.1;MIC16.1
1;155-6D021,390,54720,704,7351,344EL;FF;FL;FS;FU;MICFL01.1(HVsl2.5,HVuhm);EL01.1;FU01.1(HVlnCV);FL01.2(HVsl2.5);FS01.2;EL01.1;FF01.1;MIC01.1;FF01.2;EL01.2;FF15.1
2/3;175D0342,011,48545,719,191386FC;FL;FU;MICFL17.1(HVsl2.5,HVuhm);FU17.1(HVur);MIC17.1;FS17.1;FC17.1
2/3;175D033,185,87035,433,9851,387FL;FS;FU;SFFL03.1(HVuhm,HVsl2.5);FU03.1(HVur);SF03.1(SFCn);FS02.1;FS02.2
LGA02;LGD034-5D0450,443,62058,823,186803EL;FF;FL;FUFFD03.05;FFD03.1;FLD03.1(HVsl2.5,HVuhm,Lw);FUD03.1(HVui);ELD03.1(ELONG)
2/3;145-6D0539,041,08162,380,5831,366FF;FL;FS;FU;MICFF14.05;FU14.2(FLU);FL14.1(HVuhm);MIC14.2;FF14.1;FS14.1
2/3;146-7D054,002,91949,222,2772,191EL;FF;FL;FU;MICEL02.1;FF02.1;FL02.1(HVsl2.5,HVuhm,Lw);FU02.1(HVui);MIC02.1;FL02.2(HVuhm);FF02.2;FF03.1
9;234-6D0637,014,37047,605,5561,238EL;FF;FS;FUEL23.03;FF23.1;EL23.05(FE);EL23.1;FU23.1(HVui);FS23.2;FS23.1
LGA03;LGD024-6D0717,026,81348,701,2911,541EL;FC;FF;FL;FSFFD02.1;FLD02.2(HVsl2.5);FSD02.1;FSD02.2(STR);FCD02.1;ELD02.1
LGA03;LGD026D0713,773,74719,329,003485EL;FF;FL;FS;FUELA03.1(HVsl2.5,HVuhm,Lw);FLA03.1;FFA03.2;FSA03.1;FLA03.2;FUA03.2(FLU)
LGA03;LGD024-5D0728,919,94357,194,1671,455EL;FF;FL;FUFUA03.1(HVui);ELA03.1(HVsl2.5,HVuhm,Lw);FLA03.1;FFA03.1;FFA03.2
LGA03;LGD025D073,099,9615,211,929328EL;FC;FL;FUFLA03.2;FUA03.2(FLU);ELA03.2;FUA03.3(HVui);FCA03.1
12;264-6D0837,154,65755,710,4571,812EL;FF;FL;FS;FU;MIC;SFFL26.1(HVsl2.5,HVuhm,Lw);FL26.2(HVuhm);EL26.1;MIC26.1;FF26.1;MIC26.2;FS26.1;FU26.1(FLU);FS26.2(STR);FS26.3;SF26.2;FU26.2(HVui)
12;264-6D0841,534,67155,710,4571,450EL;FF;FL;FUFF12.1;FF12.15;FL12.1(HVsl2.5,HVuhm);FU12.2(HVlnCV,HVur);EL12.1;FF12.2
4/5;LGD089D094,942,0989,480,129552EL;FF;FL;FS;FU;MIC;SFELD08.1;FFD08.1(HVsl2.5,HVuhm,Lw);MICD08.1;ELD08.2;FLD08.1(HVsl2.5,HVuhm,Lw);FUD08.1(HVui);SFD08.1(HVsfc,SFCn);FSD08.2(STR);FFD08.2
4/5;LGD085-7D0912,049,73729,728,2271,773EL;FF;FL;FU;MIC;SFFFD08.3;MICD08.2;ELD08.3;ELD08.4;FLD08.2(HVsl2.5,HVuhm,Lw);FUD08.2(HVui);SFD08.2(HVsfc);SFD08.15;FFD08.4;MICD08.3
4/5;LGD085D0911,863,12817,291,302750EL;FF;MICFF05.15;MIC05.1;FF05.2;EL05.05(FE);FF05.3
10;205D112,519,2203,161,68357EL;FF;FL;SFEL20.1;FL20.1(HVsl2.5,Lw);SF20.1(SFCn);FL20.15(HVuhm);FF20.1
  • QTL, quantitative trait loci; WGMM, whole-genome marker map; EL: elongation; FC: color; FF: fineness; FL: length; FS: strength; FU: uniformity; MIC: micronaire; SF: short fiber content