Table 2 Marker set power and error rates
AILSTR
Type I Error RatePowerType I Error RatePower
Naive0.538**a0.802**
Last30.0590.6820.083**
Last60.0510.6740.060*
Last120.0580.6780.0570.653
AllPed0.0490.6760.0530.664
CL0.0550.8930.0560.882
IL0.099**0.102**
UL0.213**0.241**
CUL0.0480.8050.042*0.800
IUL0.078**0.080**
CUL + 10.008**0.5590.014**0.527
IUL+Last30.0520.7410.0480.716
IUL+AllPed0.040*0.7340.0520.716
  • Type 1 error rate and power at significance level 0.05 under different marker sets and variance models. AIL, advanced intercross line; STR, structured population; AllPed, entire pedigree; CL, complete linkage; IL, incomplete linkage; UL, unlinked; CUL, completely linked and unlinked; IUL, incompletely linked and unlinked.

  • * Indicate that the estimated type I error rate is significantly different from 0.05 at significance levels 0.05.

  • ** Indicate that the estimated type I error rate is significantly different from 0.05 at significance levels 0.01.

  • a Power results are not shown when the type I error rate is inflated.