Table 2 Extent of structural variation in HeLa
ClassesDELLY Calls Using PE DataDELLY Calls Using MP DataPINDEL Calls Using PE Data
No. CallsOverlap, %No. CallsOverlap, %No. CallsOverlap, %
Deletions188114.8923467.09
Duplications31238.7819169.6359122.00
Inversions3360.6113956.1210124.75
Translocations519.805010.00
  • Number of deletions, duplications, inversions, and translocations called by two methods (DELLY and PINDEL) using two different types of sequencing data: paired-end (PE) and mate pair (MP). For each category, the overlap is calculated as numbers of calls overlapping at least one of two other categories.