Table 2 Number of discovered and validated SNPs for intercept and slope for the traits on the observed scale
TraitDiscovery Dataset
(P ≤ 0.001)FDRValidation Dataset
(P ≤ 0.01)
Intercept protein yield4500.0769
Slope protein yield3510.0944
Intercept fat yield4650.07118
Slope fat yield3850.0899
Intercept milk yield4150.08104
Slope milk yield4160.0898
  • The FDR q-values (FDR) of the significant SNP with the largest error probability (P ≈ 0.001) in the discovery dataset are shown. SNP, single-nucleotide polymorphism; FDR, false-discovery rate.