Table 4 Description of QTL identified
PhenotypeChromosomePosition (cM)QTL PeakLODPVEp(F)Model CofactorSignificance Threshold
MarkerSexCentroid_SizeGW99GW95GW90CW99CW95
SMOLTOmy12179.5R348713.195.3480.0021xx
Length605Omy1321.7OmyRGT40TUF3.587.180.001xx
Length905Omy2162R103353.266.680.002xx
Length606Omy8132.1R440673.316.810.0018xx
Kfact905Omy1129.2R128304.366.810.00026xxxxx
Kfact905Omy1232Omm12583.425.290.0018xxx
Kfact905Omy14110R409023.775.850.0009xxx
KFact606Omy1294R450574.177.90.00033xxxx
KFact606Omy142R358523.476.50.0014xxx
IGRL1Omy1462R435742.995.60.0039x
IGRL1Omy20a62R435744.258.080.00028xxxx
IGRW1Omy1483.5Omm13124.057.730.00042xxx
IGRW1Omy2750Omy1179INRA3.286.20.0022xx
IGRL2Omy12174R418853.736.850.00087xxx
IGRL2Omy1880.5Omy1045INRA3.135.70.0031xx
IGRW2Omy12173.8R418852.9885.380.0043xx
IGRW2Omy1880Omy1318INRA3.3366.030.0021xxx
IGRW2Omy438R096143.897.080.00067xxxx
AvgPixOmy2810R113585.4513.630.000024xxxxx
AvgPixOmy5a174R375534.33310.650.00026xxxx
BPNaOmy11150R422093.4811.810.0015xx
Centroid_SizeOmy12160Omy1166INRA4.919.970.000068xxxxx
Centroid_SizeOmy416R356343.767.530.00079xxx
RelW2Omy2712R424684.055.920.00051xxxx
RelW2Omy686R251893.885.650.00073xxxx
RelW2Omy760.8R145002.794.010.0068xx
RelW3Omy1288R450574.669.50.00012xxxxx
RelW3Omy1463.1R450593.36.60.0021xxx
RelW4Omy1474R409083.146.530.0027xxx
RelW6Omy1174Omy1279INRA5.679.160.00002xxxxxxx
RelW6Omy20a53.6R018474.837.720.00011xxxxxx
RelW6Omy5a66R448214.827.70.00011xxxxxx
RelW6Omy828R414095.659.110.00002xxxxxxx
RelW9Omy14102R409023.376.50.0019xx
RelW9Omy710Ots1004.348.50.00025xxxxx
RelW10Omy16134R425443.046.230.0036x
RelW10Omy655.6Omm53163.066.270.0034xx
  • Identification includes phenotype; chromosome; position (position of qtl peak on chromosome); QTL peak marker; LOD (log10 likelihood ratio for presence of QTL); PVE (percentage variation explained in phenotype by QTL); p(F) (P value of the F-statistic); model cofactor (indication of whether Sex or Centroid_Size was used as an additive cofactor in QTL model); and significance threshold at the GW (genome-wide) or CW (chromsome-wide) 99, 95, or 90% level.