Table 1 CO span detail
ProgenyClassDistal SNPParentProximal SNPParentCO SpanBandLocationGene
2dSCO2,413,159w11182,413,912Canton-S7533A4Introntrol
3aSCO4,860,933w11184,861,309Canton-S3764E1Intergenicn/a
1eDCO5,441,397Canton-S5,441,591w11181945A4IntronVsx2
1aSCO6,601,365w11186,601,675Canton-S3106C8IntronCG14441
1bSCO8,000,862w11188,001,116Canton-S2547D6IntronGclc
2cSCO8,834,132Canton-S8,834,399w11182678C1IntronrdgA
3bSCO8,862,810Canton-S8,863,096w11182868C1IntronrdgA
2eSCO10,437,477w111810,455,495Canton-S18,0189D3Intron, exonspri
4aDCO11,968,504Canton-S11,969,790w11181,28611A3Intergenicn/a
2aDCO11,992,791w111811,994,201Canton-S1,41011A3Intergenicn/a
1cSCO12,813,592w111812,814,988Canton-S1,39611D3Intergenicn/a
1dSCO15,696,462Canton-S15,697,193w111873113F1Intron, exon, and intergenicPGRP-LE
1eDCO16,511,826w111816,514,097Canton-S2,27114F2IntronCG9782
4aDCO19,291,635w111819,293,197Canton-S1,56218C3Intronkek5
2aDCO19,451,465Canton-S19,453,294w11181,82918D1Intergenicn/a
  • All COs found in the progeny along with the SNP or InDel locations used to define the boundaries of the CO. Progeny indicates the individual F1 identifier. Number indicates mother and letter designates specific progeny of a given mother. Distal SNP indicates the position of most distal SNP flanking the crossover. Parent indicates the genotypic designation of the SNP. Proximal SNP indicates the position of most proximal SNP flanking the crossover. Parent indicates the genotypic designation of the SNP. CO span indicates the distance between flanking SNPs. Band indicates the cytological position of crossover. Location indicates the identity of crossover position. Finally, gene indicates the gene identifier for crossovers in introns or exons.

  • CO, crossover; SNP, single-nucleotide polymorphism; SCO, single crossover; DCO, double crossover.