Table 1  EST derived SNP markers used to construct the D. serrata linkage map
MarkerD. serrata Linkage GroupD. melanogaster Chr. ArmCG No.Flybase Locus NameFlyBaseIDMAFP Value
s1XXCG14792Dmel\staFBgn00035170.450.000
s2XXCG6186Dmel\Tsf1FBgn00223550.400.000
s333RCG5887Dmel\desat1FBgn00866870.490.000
s422RCG3401Dmel\BTub60DFBgn00038880.350.107
s533RCG11522Dmel\RpL6FBgn00398570.260.012
s622LCG7361Dmel\RFeSPFBgn00219060.430.001
s733RCG2216Dmel\Fer1HCHFBgn00152220.430.000
s822LCG13094Dmel\Dh31FBgn00320480.370.290
s922RCG3124Dmel\CG3124FBgn00348400.290.000
s10Not mapped2LCG9042Dmel\GpdhFBgn00011280.000.000
s112a2LCG31811Dmel\cenG1AFBgn00285090.120.000
s1222LCG31811Dmel\cenG1AFBgn00285090.290.000
s1333RCG15697Dmel\RpS30FBgn00388340.310.546
s1433LCG6988Dmel\PdiFBgn00140020.310.345
s1533RCG11901Dmel\Ef1γFBgn00291760.330.000
s1622LCG34394Dmel\CG34394FBgn00854230.390.042
s1733RCG8036Dmel\CG8036FBgn00376070.290.046
s1822LCG9244Dmel\AconFBgn00101000.460.000
s1922RCG6692Dmel\Cp1FBgn00137700.380.084
s2033RCG5502Dmel\RpL4FBgn00032790.290.138
s2122LCG6105Dmel\I(2)06225FBgn00106120.490.000
s2233LCG4769Dmel\CG4769FBgn00356000.310.478
s232a2RCG5330Dmel\Nap1FBgn00152680.180.000
s2422RCG5330Dmel\Nap1FBgn00152680.370.338
s2533LCG11276RpS4FBgn00112840.280.026
s2633LCG6871Dmel\CatFBgn00002610.290.210
s2733LCG6871Dmel\CatFBgn00002610.300.347
s28XXCG8893Dmel\Gapdh2FBgn00010910.430.000
s29XXCG14235Dmel\CG14235FBgn00310660.420.000
s3033RCG2216Dmel\Fer1HCHFBgn00152220.440.000
s3133RCG10901Dmel\oskFBgn00030150.300.482
s3233RCG11901Dmel\Ef1γFBgn00291760.300.364
s33XXCG1372Dmel\ylFBgn00046490.430.000
s342a2RCG3161Dmel\Vha16-1FBgn02627360.170.000
s3533RCG11033Dmel\Kdm2FBgn00376590.480.000
s36Not mapped3RCG7610Dmel\ATPsyn-γFBgn00202350.000.000
s37Not mapped3LCG6988Dmel\PdiFBgn00140020.000.000
s3833LCG4183Dmel\Hsp26FBgn00012250.290.061
s3922LCG5397Dmel\CG5397FBgn00313270.400.021
s40XXCG32635Dmel\CG32635FBgn00526350.410.000
s4122LCG4824Dmel\BicCFBgn00001820.370.205
s422a2RCG9364Dmel\TrehFBgn00037480.220.000
s4333LCG10472Dmel\CG10472FBgn00356700.300.421
s4444No definition line found1095281-1095303_0.320.226
s4533LCG6806Dmel\Lsp2FBgn00025650.310.507
s4633LCG11793Dmel\SodFBgn00034620.290.065
s4733LCG8189Dmel\ATPsyn-bFBgn00196440.280.032
s4833LNo definition line found18976884-18976901_0.330.485
s4922RCG18067Dmel\CG18067FBgn00345120.370.113
s5022LCG4233Dmel\Got2FBgn00011250.460.000
s51XXCG32816Dmel\CG32816FBgn00528160.460.000
s5222RCG4696Dmel\Mp20FBgn00027890.350.081
s5322LCG9042Dmel\GpdhFBgn00011280.400.025
s5422RCG8983Dmel\ERp60FBgn00336630.400.017
s55XXCG14792Dmel\staFBgn00035170.450.000
s5622LCG9075Dmel\eIF-4aFBgn00019420.430.000
s5722LCG9075Dmel\eIF-4aFBgn00019420.360.213
s5822LCG31811Dmel\cenG1AFBgn00285090.470.000
s5922RCG10911Dmel\CG10911FBgn00342950.430.000
s6033RCG6439Dmel\CG6439FBgn00389220.320.807
s6122LCG3763Dmel\Fbp2FBgn00006400.370.279
  • Included are D. melanogaster gene names corresponding to the top BLAST hit of the full EST to the D. melanogaster genome.

  • a Markers that were assigned to chromosomal arms but not mapped on the linkage map because of transmission ratio distortion. MAF is the minor allele frequency in the entire dataset of 414 individuals and P-values correspond to χ2 for deviation from Mendelian expectations in the combined datasets (d.f. = 2 for autosomal markers and d.f. = 1 for X-linked markers).