Table 4  Linkage disequilibrium around centromere 2 and telomerase RNA gene (TER1)
Chromosome II centromere
 R/chi1572349162109116583921658455
 1572349−0.396−0.597−0.396
 16210916.271*0.6641
 165839214.235***17.622***0.664
 16584556.271*40***17.622***
 D'1572349162109116583921658455
 1572349−1−1−1
 162109111
 16583921
 1658455
Chromosome I TER1 region
 R/chi30847623086123311423931144313194949
 30847620.5550.2670.434−0.248
 308612312.31***0.3390.236−0.089
 31142392.8574.596*0.85−0.0207
 31144317.519**2.22228.9***−0.333
 31949492.4620.321.7091.778
 D'30847623086123311423931144313194949
 30847620.8260.3310.457−0.0373
 30861230.4070.236−0.2
 31142391−0.385
 3114431−0.333
 3194949
  • Haplotypes at individual loci were identified to identify informative SNPs, and these were used to measure linkage disequilibrium by the indicated metrics using the DNAsp package. The significance of the chi squared values are indicated by asterisks: *, at the 5% level; **, at the 1% level; ***, at the 0.1% level. The numbers in bold at the margins of the table refer to the coordinates along the chromosome of the respective, informative SNPs.