Table 2 Stacks marker types

Marker type	Female	Male	Number of segregating alleles	Notes
ab/aa	Heterozygous	Homozygous	2
aa/ab	Homozygous	Heterozygous	2
ab/ab	Heterozygous	Heterozygous	2
aa/bb	Homozygous	Homozygous	2	Detected by cstacks
ab/–	Heterozygous	Absent	2	Polymorphic RAD-site in male, restriction site mutated in female
–/ab	Absent	Heterozygous	2	Polymorphic RAD-site in female, restriction site mutated in male
ab/cc	Heterozygous	Homozygous	3	ab detected by ustacks, cc detected by cstacks
cc/ab	Homozygous	Heterozygous	3	ab detected by ustacks, cc detected by cstacks
ab/ac	Heterozygous	Heterozygous	3
ab/cd	Heterozygous	Heterozygous	4