Invertebrate

C. elegans

Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel
Open Access

Luke M. Noble, Ivo Chelo, Thiago Guzella, Bruno Afonso, David D. Riccardi, Patrick Ammerman, Adel Dayarian, Sara Carvalho, Anna Crist, Ania Pino-Querido, Boris Shraiman, Matthew V. Rockman, Henrique Teotónio

Genetics December 2017 207: 1663-1685; https://doi.org/10.1534/genetics.117.300406
Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans
Open Access

Rajarshi Ghosh, Joshua S. Bloom, Aylia Mohammadi, Molly E. Schumer, Peter Andolfatto, William Ryu, Leonid Kruglyak

Genetics August 2015 200: 1327-1339; https://doi.org/10.1534/genetics.115.178491
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
Open Access

Owen A. Thompson, L. Basten Snoek, Harm Nijveen, Mark G. Sterken, Rita J. M. Volkers, Rachel Brenchley, Arjen van’t Hof, Roel P. J. Bevers, Andrew R. Cossins, Itai Yanai, Alex Hajnal, Tobias Schmid, Jaryn D. Perkins, David Spencer, Leonid Kruglyak, Erik C. Andersen, Donald G. Moerman, LaDeana W. Hillier, Jan E. Kammenga, Robert H. Waterston

Genetics July 2015 200: 975-989; https://doi.org/10.1534/genetics.115.175950
Crossover Heterogeneity in the Absence of Hotspots in Caenorhabditis elegans

Taniya Kaur, Matthew V. Rockman

Genetics January 2014 196: 137-148; https://doi.org/10.1534/genetics.113.158857
More Than the Sum of Its Parts: A Complex Epistatic Network Underlies Natural Variation in Thermal Preference Behavior in Caenorhabditis elegans

Bryn E. Gaertner, Michelle D. Parmenter, Matthew V. Rockman, Leonid Kruglyak, Patrick C. Phillips

Genetics December 2012 192: 1533-1542; https://doi.org/10.1534/genetics.112.142877

Drosophila DsGRP

A Genomic Reference Panel for Drosophila serrata
Adam J. Reddiex, Scott L. Allen, Stephen F. Chenoweth

G3: Genes, Genomes, Genetics April 2018 8: 1335-1346; https://doi.org/10.1534/g3.117.300487

Drosophila DGRP

The Beavis Effect in Next-Generation Mapping Panels in Drosophila melanogaster
Elizabeth G. King, Anthony D. Long

G3: Genes, Genomes, Genetics June 2017 7: 1643-1652; https://doi.org/10.1534/g3.117.041426
Loci Contributing to Boric Acid Toxicity in Two Reference Populations of Drosophila melanogaster
Michael A. Najarro, Jennifer L. Hackett, Stuart J. Macdonald

G3: Genes, Genomes, Genetics June 2017 7: 1631-1641; https://doi.org/10.1534/g3.117.041418
Genetic Dissection of Nutrition-Induced Plasticity in Insulin/Insulin-Like Growth Factor Signaling and Median Life Span in a Drosophila Multiparent Population

Patrick D. Stanley, Enoch Ng’oma, Siri O’Day, Elizabeth G. King

Genetics June 2017 206: 587-602; https://doi.org/10.1534/genetics.116.197780
Paternal Induction of Hybrid Dysgenesis in Drosophila melanogaster Is Weakly Correlated with Both P-Element and hobo Element Dosage
Satyam P. Srivastav, Erin S. Kelleher

G3: Genes, Genomes, Genetics May 2017 7: 1487-1497; https://doi.org/10.1534/g3.117.040634
A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver in Drosophila

Kevin H.-C. Wei, Hemakumar M. Reddy, Chandramouli Rathnam, Jimin Lee, Deanna Lin, Shuqing Ji, James M. Mason, Andrew G. Clark, Daniel A. Barbash

Genetics May 2017 206: 451-465; https://doi.org/10.1534/genetics.116.197335
Genomic and Transcriptomic Associations Identify a New Insecticide Resistance Phenotype for the Selective Sweep at the Cyp6g1 Locus of Drosophila melanogaster
Paul Battlay, Joshua M. Schmidt, Alexandre Fournier-Level, Charles Robin

G3: Genes, Genomes, Genetics August 2016 6: 2573-2581; https://doi.org/10.1534/g3.116.031054
Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster

Stefan M. Edwards, Izel F. Sørensen, Pernille Sarup, Trudy F. C. Mackay, Peter Sørensen

Genetics August 2016 203: 1871-1883; https://doi.org/10.1534/genetics.116.187161
Variation and Evolution in the Glutamine-Rich Repeat Region of Drosophila Argonaute-2
William H. Palmer, Darren J. Obbard

G3: Genes, Genomes, Genetics August 2016 6: 2563-2572; https://doi.org/10.1534/g3.116.031880
Genetic Background, Maternal Age, and Interaction Effects Mediate Rates of Crossing Over in Drosophila melanogaster Females
Chad M. Hunter, Matthew C. Robinson, David L. Aylor, Nadia D. Singh

G3: Genes, Genomes, Genetics May 2016 6: 1409-1416; https://doi.org/10.1534/g3.116.027631
Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila
Open Access

Jim A. Mossman, Leann M. Biancani, Chen-Tseh Zhu, David M. Rand

Genetics May 2016 203: 463-484; https://doi.org/10.1534/genetics.116.187286
Drosophila melanogaster Natural Variation Affects Growth Dynamics of Infecting Listeria monocytogenes
Alejandra Guzmán Hotson, David S. Schneider

G3: Genes, Genomes, Genetics December 2015 5: 2593-2600; https://doi.org/10.1534/g3.115.022558
The Nature, Extent, and Consequences of Genetic Variation in the opa Repeats of Notch in Drosophila
Clinton Rice, Danielle Beekman, Liping Liu, Albert Erives

G3: Genes, Genomes, Genetics November 2015 5: 2405-2419; https://doi.org/10.1534/g3.115.021659
Genetic Control of Environmental Variation of Two Quantitative Traits of Drosophila melanogaster Revealed by Whole-Genome Sequencing

Peter Sørensen, Gustavo de los Campos, Fabio Morgante, Trudy F. C. Mackay, Daniel Sorensen

Genetics October 2015 201: 487-497; https://doi.org/10.1534/genetics.115.180273
Linkage Disequilibrium and Inversion-Typing of the Drosophila melanogaster Genome Reference Panel
David Houle, Eladio J. Márquez

G3: Genes, Genomes, Genetics August 2015 5: 1695-1701; https://doi.org/10.1534/g3.115.019554
Heritable Variation in Courtship Patterns in Drosophila melanogaster
Bryn E. Gaertner, Elizabeth A. Ruedi, Lenovia J. McCoy, Jamie M. Moore, Mariana F. Wolfner, Trudy F. C. Mackay

G3: Genes, Genomes, Genetics April 2015 5: 531-539; https://doi.org/10.1534/g3.114.014811
A Genome-Wide Association Study for Nutritional Indices in Drosophila
Robert L. Unckless, Susan M. Rottschaefer, Brian P. Lazzaro

G3: Genes, Genomes, Genetics March 2015 5: 417-425; https://doi.org/10.1534/g3.114.016477
Gene Expression Variation in Drosophila melanogaster Due to Rare Transposable Element Insertion Alleles of Large Effect
Open Access

Julie M. Cridland, Kevin R. Thornton, Anthony D. Long

Genetics January 2015 199: 85-93; https://doi.org/10.1534/genetics.114.170837
A Drosophila Protease Cascade Member, Seminal Metalloprotease-1, Is Activated Stepwise by Male Factors and Requires Female Factors for Full Activity

Brooke A. LaFlamme, Frank W. Avila, Kevin Michalski, Mariana F. Wolfner

Genetics April 2014 196: 1117-1129; https://doi.org/10.1534/genetics.113.160101
Effect of Genetic Variation in a Drosophila Model of Diabetes-Associated Misfolded Human Proinsulin
Open Access

Bin Z. He, Michael Z. Ludwig, Desiree A. Dickerson, Levi Barse, Bharath Arun, Bjarni J. Vilhjálmsson, Pengyao Jiang, Soo-Young Park, Natalia A. Tamarina, Scott B. Selleck, Patricia J. Wittkopp, Graeme I. Bell, Martin Kreitman

Genetics February 2014 196: 557-567; https://doi.org/10.1534/genetics.113.157800
Large Neurological Component to Genetic Differences Underlying Biased Sperm Use in Drosophila

Clement Y. Chow, Mariana F. Wolfner, Andrew G. Clark

Genetics January 2013 193: 177-185; https://doi.org/10.1534/genetics.112.146357

Drosophila DSPR

Dissection of Complex, Fitness-Related Traits in Multiple Drosophila Mapping Populations Offers Insight into the Genetic Control of Stress Resistance
Open Access

Elizabeth R. Everman, Casey L. McNeil, Jennifer L. Hackett, Clint L. Bain, Stuart J. Macdonald

Genetics April 2019 211: 1449-1467; https://doi.org/10.1534/genetics.119.301930
The Genetic Architecture of Ovariole Number in Drosophila melanogaster: Genes with Major, Quantitative, and Pleiotropic Effects
Amanda S. Lobell, Rachel R. Kaspari, Yazmin L. Serrano Negron, Susan T. Harbison

G3: Genes, Genomes, Genetics July 2017 7: 2391-2403; https://doi.org/10.1534/g3.117.042390
The Beavis Effect in Next-Generation Mapping Panels in Drosophila melanogaster
Elizabeth G. King, Anthony D. Long

G3: Genes, Genomes, Genetics June 2017 7: 1643-1652; https://doi.org/10.1534/g3.117.041426
Fine-Mapping Nicotine Resistance Loci in Drosophila Using a Multiparent Advanced Generation Inter-Cross Population

Tara N. Marriage, Elizabeth G. King, Anthony D. Long, Stuart J. Macdonald

Genetics September 2014 198: 45-57; https://doi.org/10.1534/genetics.114.162107
Using Drosophila melanogaster To Identify Chemotherapy Toxicity Genes

Elizabeth G. King, Galina Kislukhin, Kelli N. Walters, Anthony D. Long

Genetics September 2014 198: 31-43; https://doi.org/10.1534/genetics.114.161968
Systems Genomics of Metabolic Phenotypes in Wild-Type Drosophila melanogaster
Open Access

Laura K. Reed, Kevin Lee, Zhi Zhang, Lubna Rashid, Amy Poe, Benjamin Hsieh, Nigel Deighton, Norm Glassbrook, Rolf Bodmer, Greg Gibson

Genetics June 2014 197: 781-793; https://doi.org/10.1534/genetics.114.163857
The Genetic Architecture of Methotrexate Toxicity Is Similar in Drosophila melanogaster and Humans
Galina Kislukhin, Elizabeth G. King, Kelli N. Walters, Stuart J. Macdonald, Anthony D. Long

G3: Genes, Genomes, Genetics August 2013 3: 1301-1310; https://doi.org/10.1534/g3.113.006619
Properties and Power of the Drosophila Synthetic Population Resource for the Routine Dissection of Complex Traits

Elizabeth G. King, Stuart J. Macdonald, Anthony D. Long

Genetics July 2012 191: 935-949; https://doi.org/10.1534/genetics.112.138537

Interspecific

Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila
Open Access

Jim A. Mossman, Leann M. Biancani, Chen-Tseh Zhu, David M. Rand

Genetics May 2016 203: 463-484; https://doi.org/10.1534/genetics.116.187286

Nexus

The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
Open Access

Justin B. Lack, Charis M. Cardeno, Marc W. Crepeau, William Taylor, Russell B. Corbett-Detig, Kristian A. Stevens, Charles H. Langley, John E. Pool

Genetics April 2015 199: 1229-1241; https://doi.org/10.1534/genetics.115.174664

Yeast

Two Synthetic 18-Way Outcrossed Populations of Diploid Budding Yeast with Utility for Complex Trait Dissection

Robert A. Linder, Arundhati Majumder, Mahul Chakraborty, Anthony Long

Genetics June 2020 215: 323-342; https://doi.org/10.1534/genetics.120.303202
Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses
Francisco A. Cubillos, Claire Brice, Jennifer Molinet, Sebastién Tisné, Valentina Abarca, Sebastián M. Tapia, Christian Oporto, Verónica García, Gianni Liti, Claudio Martínez

G3: Genes, Genomes, Genetics June 2017 7: 1693-1705; https://doi.org/10.1534/g3.117.042127
Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale
Martin Zackrisson, Johan Hallin, Lars-Göran Ottosson, Peter Dahl, Esteban Fernandez-Parada, Erik Ländström, Luciano Fernandez-Ricaud, Petra Kaferle, Andreas Skyman, Simon Stenberg, Stig Omholt, Uroš Petrovič, Jonas Warringer, Anders Blomberg

G3: Genes, Genomes, Genetics September 2016 6: 3003-3014; https://doi.org/10.1534/g3.116.032342
High-Resolution Mapping of Complex Traits with a Four-Parent Advanced Intercross Yeast Population

Francisco A. Cubillos, Leopold Parts, Francisco Salinas, Anders Bergström, Eugenio Scovacricchi, Amin Zia, Christopher J. R. Illingworth, Ville Mustonen, Sebastian Ibstedt, Jonas Warringer, Edward J. Louis, Richard Durbin, Gianni Liti

Genetics November 2013 195: 1141-1155; https://doi.org/10.1534/genetics.113.155515

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