Relatedness Matrix Estimation

Relatedness Matrix Estimation

• Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize

  Simon Rio, Laurence Moreau, Alain Charcosset, Tristan Mary-Huard

  Genetics September 2020 216: 27-41; https://doi.org/10.1534/genetics.120.303278
• Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (Salvelinus alpinus)

  Christos Palaiokostas, Shannon M. Clarke, Henrik Jeuthe, Rudiger Brauning, Timothy P. Bilton, Ken G. Dodds, John C. McEwan, Dirk-Jan De Koning

  G3: Genes, Genomes, Genetics June 2020 10: 2069-2078; https://doi.org/10.1534/g3.120.401295
• Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction

  Ivone de Bem Oliveira, Marcio F. R. Resende, Luis Felipe V. Ferrão, Rodrigo R. Amadeu, Jeffrey B. Endelman, Matias Kirst, Alexandre S. G. Coelho, Patricio R. Munoz

  G3: Genes, Genomes, Genetics April 2019 9: 1189-1198; https://doi.org/10.1534/g3.119.400059
• Genomic Prediction Using Multi-trait Weighted GBLUP Accounting for Heterogeneous Variances and Covariances Across the Genome

  Emre Karaman, Mogens S. Lund, Mahlet T. Anche, Luc Janss, Guosheng Su

  G3: Genes, Genomes, Genetics November 2018 8: 3549-3558; https://doi.org/10.1534/g3.118.200673
• Multi-population Genomic Relationships for Estimating Current Genetic Variances Within and Genetic Correlations Between Populations

   

  Yvonne C. J. Wientjes, Piter Bijma, Jérémie Vandenplas, Mario P. L. Calus

  Genetics October 2017 207: 503-515; https://doi.org/10.1534/genetics.117.300152
• Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

   

  Zulma G. Vitezica, Andrés Legarra, Miguel A. Toro, Luis Varona

  Genetics July 2017 206: 1297-1307; https://doi.org/10.1534/genetics.116.199406
• Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium

   

  Pascal Schopp, Dominik Müller, Frank Technow, Albrecht E. Melchinger

  Genetics January 2017 205: 441-454; https://doi.org/10.1534/genetics.116.193243
• Covariance Between Genotypic Effects and its Use for Genomic Inference in Half-Sib Families

  Dörte Wittenburg, Friedrich Teuscher, Jan Klosa, Norbert Reinsch

  G3: Genes, Genomes, Genetics September 2016 6: 2761-2772; https://doi.org/10.1534/g3.116.032409
• Needles: Toward Large-Scale Genomic Prediction with Marker-by-Environment Interaction

   

  Arne De Coninck, Bernard De Baets, Drosos Kourounis, Fabio Verbosio, Olaf Schenk, Steven Maenhout, Jan Fostier

  Genetics May 2016 203: 543-555; https://doi.org/10.1534/genetics.115.179887
• Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects

  Omnia Gamal El-Dien, Blaise Ratcliffe, Jaroslav Klápště, Ilga Porth, Charles Chen, Yousry A. El-Kassaby

  G3: Genes, Genomes, Genetics March 2016 6: 743-753; https://doi.org/10.1534/g3.115.025957
• Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix

  Zhe Zhang, Malena Erbe, Jinlong He, Ulrike Ober, Ning Gao, Hao Zhang, Henner Simianer, Jiaqi Li

  G3: Genes, Genomes, Genetics April 2015 5: 615-627; https://doi.org/10.1534/g3.114.016261
• Developmental Defects in a Caenorhabditis elegans Model for Type III Galactosemia

   

  Ana M. Brokate-Llanos, José M. Monje, Piedad del Socorro Murdoch, Manuel J. Muñoz

  Genetics December 2014 198: 1559-1569; https://doi.org/10.1534/genetics.114.170084
• Shrinkage Estimation of the Realized Relationship Matrix

  Jeffrey B. Endelman, Jean-Luc Jannink

  G3: Genes, Genomes, Genetics November 2012 2: 1405-1413; https://doi.org/10.1534/g3.112.004259
• Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

   

  R. Rincent, D. Laloë, S. Nicolas, T. Altmann, D. Brunel, P. Revilla, V.M. Rodríguez, J. Moreno-Gonzalez, A. Melchinger, E. Bauer, C-C. Schoen, N. Meyer, C. Giauffret, C. Bauland, P. Jamin, J. Laborde, H. Monod, P. Flament, A. Charcosset, L. Moreau

  Genetics October 2012 192: 715-728; https://doi.org/10.1534/genetics.112.141473
• Inferences from Genomic Models in Stratified Populations

   

  Luc Janss, Gustavo de los Campos, Nuala Sheehan, Daniel Sorensen

  Genetics October 2012 192: 693-704; https://doi.org/10.1534/genetics.112.141143
• The Impact of Genetic Relationship Information on Genome-Assisted Breeding Values

   

  D. Habier, R. L. Fernando, J. C. M. Dekkers

  Genetics December 2007 177: 2389-2397; https://doi.org/10.1534/genetics.107.081190
• Genomic-Assisted Prediction of Genetic Value With Semiparametric Procedures

   

  Daniel Gianola, Rohan L. Fernando, Alessandra Stella

  Genetics July 2006 173: 1761-1776; https://doi.org/10.1534/genetics.105.049510