March 2019 Table of Contents

Investigations

• A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat

  Nicholas Santantonio, Jean-Luc Jannink, Mark Sorrells

  G3: Genes, Genomes, Genetics March 2019 9: 675-684; https://doi.org/10.1534/g3.118.200646
• Prediction of Subgenome Additive and Interaction Effects in Allohexaploid Wheat

  Nicholas Santantonio, Jean-Luc Jannink, Mark Sorrells

  G3: Genes, Genomes, Genetics March 2019 9: 685-698; https://doi.org/10.1534/g3.118.200613
• Genetic Effects on Dispersion in Urinary Albumin and Creatinine in Three House Mouse (Mus musculus) Cohorts

  Guy M. L. Perry

  G3: Genes, Genomes, Genetics March 2019 9: 699-708; https://doi.org/10.1534/g3.118.200940
• High Level of Conservation of Mitochondrial RNA Editing Sites Among Four Populus Species

  Wolfram Georg Brenner, Malte Mader, Niels Andreas Müller, Hans Hoenicka, Hilke Schroeder, Ingo Zorn, Matthias Fladung, Birgit Kersten

  G3: Genes, Genomes, Genetics March 2019 9: 709-717; https://doi.org/10.1534/g3.118.200763
• Experimental Mutations in Superoxide Dismutase 1 Provide Insight into Potential Mechanisms Involved in Aberrant Aggregation in Familial Amyotrophic Lateral Sclerosis

  Anthony M. Crown, Brittany L. Roberts, Keith Crosby, Hilda Brown, Jacob I. Ayers, P. John Hart, David R. Borchelt

  G3: Genes, Genomes, Genetics March 2019 9: 719-728; https://doi.org/10.1534/g3.118.200787
• Genetic, Inflammatory, and Epithelial Cell Differentiation Factors Control Expression of Human Calpain-14

  Daniel E. Miller, Carmy Forney, Mark Rochman, Stacey Cranert, Jeffery Habel, Jeffrey Rymer, Arthur Lynch, Connor Schroeder, Josh Lee, Amber Sauder, Quinton Smith, Mehak Chawla, Michael P. Trimarchi, Xiaoming Lu, Ellen Fjellman, Michael Brusilovsky, Artem Barski, Stephen Waggoner, Matthew T. Weirauch, Marc E. Rothenberg, Leah C. Kottyan

  G3: Genes, Genomes, Genetics March 2019 9: 729-736; https://doi.org/10.1534/g3.118.200901
• Conditional Synaptic Vesicle Markers for Drosophila

  Jessica L. Williams, Harold K. Shearin, R. Steven Stowers

  G3: Genes, Genomes, Genetics March 2019 9: 737-748; https://doi.org/10.1534/g3.118.200975
• Shep RNA-Binding Capacity Is Required for Antagonism of gypsy Chromatin Insulator Activity

  Dahong Chen, Margarita Brovkina, Leah H. Matzat, Elissa P. Lei

  G3: Genes, Genomes, Genetics March 2019 9: 749-754; https://doi.org/10.1534/g3.118.200923
• Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development

  Andrea Minio, Mélanie Massonnet, Rosa Figueroa-Balderas, Amanda M. Vondras, Barbara Blanco-Ulate, Dario Cantu

  G3: Genes, Genomes, Genetics March 2019 9: 755-767; https://doi.org/10.1534/g3.118.201008
• The Role of UV-B light on Small RNA Activity During Grapevine Berry Development

  Sukumaran Sunitha, Rodrigo Loyola, José Antonio Alcalde, Patricio Arce-Johnson, José Tomás Matus, Christopher D. Rock

  G3: Genes, Genomes, Genetics March 2019 9: 769-787; https://doi.org/10.1534/g3.118.200805
• Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample

  Guillaume P. Ramstein, Michael D. Casler

  G3: Genes, Genomes, Genetics March 2019 9: 789-805; https://doi.org/10.1534/g3.118.200969
• Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant Ferula assafoetida

  Hajar Amini, Mohammad Reza Naghavi, Tong Shen, Yanhong Wang, Jaber Nasiri, Ikhlas A. Khan, Oliver Fiehn, Philipp Zerbe, Julin N. Maloof

  G3: Genes, Genomes, Genetics March 2019 9: 807-816; https://doi.org/10.1534/g3.118.200852
• Identification of Gene Variants Associated with Melanocyte Stem Cell Differentiation in Mice Predisposed for Hair Graying

  Allison C. Fialkowski, Denise J. Levy, Dawn E. Watkins-Chow, Joseph W. Palmer, Roshan Darji, Hemant K. Tiwari, William J. Pavan, Melissa L. Harris

  G3: Genes, Genomes, Genetics March 2019 9: 817-827; https://doi.org/10.1534/g3.118.200965
• Auxin-Inducible Depletion of the Essentialome Suggests Inhibition of TORC1 by Auxins and Inhibition of Vrg4 by SDZ 90-215, a Natural Antifungal Cyclopeptide

  Nathan A. Snyder, Adam Kim, Louis Kester, Andrew N. Gale, Christian Studer, Dominic Hoepfner, Silvio Roggo, Stephen B. Helliwell, Kyle W. Cunningham

  G3: Genes, Genomes, Genetics March 2019 9: 829-840; https://doi.org/10.1534/g3.118.200748
• Aegilops tauschii Genome Sequence: A Framework for Meta-analysis of Wheat QTLs

  Jiale Xu, Xiongtao Dai, Ramesh K. Ramasamy, Le Wang, Tingting Zhu, Patrick E. McGuire, Chad M. Jorgensen, Hamid Dehghani, Patrick J. Gulick, Ming-Cheng Luo, Hans-Georg Müller, Jan Dvorak

  G3: Genes, Genomes, Genetics March 2019 9: 841-853; https://doi.org/10.1534/g3.118.200921
• Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

  Marie Fablet, Angelo Jacquet, Rita Rebollo, Annabelle Haudry, Carine Rey, Judit Salces-Ortiz, Prajakta Bajad, Nelly Burlet, Michael F. Jantsch, Maria Pilar García Guerreiro, Cristina Vieira

  G3: Genes, Genomes, Genetics March 2019 9: 855-865; https://doi.org/10.1534/g3.118.200789
• Identification of Suppressor of Clathrin Deficiency-1 (SCD1) and Its Connection to Clathrin-Mediated Endocytosis in Saccharomyces cerevisiae

  Balaji T. Moorthy, Anupam Sharma, Douglas R. Boettner, Thomas E. Wilson, Sandra K. Lemmon

  G3: Genes, Genomes, Genetics March 2019 9: 867-877; https://doi.org/10.1534/g3.118.200782
• Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies

  Alexander P. Douglass, Caoimhe E. O’Brien, Benjamin Offei, Aisling Y. Coughlan, Raúl A. Ortiz-Merino, Geraldine Butler, Kevin P. Byrne, Kenneth H. Wolfe

  G3: Genes, Genomes, Genetics March 2019 9: 879-887; https://doi.org/10.1534/g3.118.200745
• Turning Observed Founder Alleles into Expected Relationships in an Intercross Population

  Jilun Meng, Manfred Mayer, Erika Wytrwat, Martina Langhammer, Norbert Reinsch

  G3: Genes, Genomes, Genetics March 2019 9: 889-899; https://doi.org/10.1534/g3.118.200752
• The mir-35 Family Links Maternal Germline Sex to Embryonic Viability in Caenorhabditis elegans

  Lars Kristian Benner, Katherine Perkins Prothro, Katherine McJunkin

  G3: Genes, Genomes, Genetics March 2019 9: 901-909; https://doi.org/10.1534/g3.118.200863
• Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids

  Ty Russell, Catherine Cullingham, Arun Kommadath, Paul Stothard, Allen Herbst, David Coltman

  G3: Genes, Genomes, Genetics March 2019 9: 911-919; https://doi.org/10.1534/g3.118.200838
• Genome-Wide Studies of Rho5-Interacting Proteins That Are Involved in Oxidant-Induced Cell Death in Budding Yeast

  Komudi Singh, Mid Eum Lee, Maryam Entezari, Chan-Hun Jung, Yeonsoo Kim, Youngmin Park, Jack D. Fioretti, Won-Ki Huh, Hay-Oak Park, Pil Jung Kang

  G3: Genes, Genomes, Genetics March 2019 9: 921-931; https://doi.org/10.1534/g3.118.200887
• Transcriptional Basis of Copper-Induced Olfactory Impairment in the Sea Lamprey, a Primitive Invasive Fish

  Jenna Jones, Kyle Wellband, Barbara Zielinski, Daniel D. Heath

  G3: Genes, Genomes, Genetics March 2019 9: 933-941; https://doi.org/10.1534/g3.118.200920
• Arginine to Glutamine Variant in Olfactomedin Like 3 (OLFML3) Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed

  Carys A. Pugh, Lindsay L. Farrell, Ailsa J. Carlisle, Stephen J. Bush, Adam Ewing, Violeta Trejo-Reveles, Oswald Matika, Arne de Kloet, Caitlin Walsh, Stephen C. Bishop, James G. D. Prendergast, Joe Rainger, Jeffrey J. Schoenebeck, Kim M. Summers

  G3: Genes, Genomes, Genetics March 2019 9: 943-954; https://doi.org/10.1534/g3.118.200944
• Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr Salvelinus fontinalis

  Ben J. G. Sutherland, Jenni M. Prokkola, Céline Audet, Louis Bernatchez

  G3: Genes, Genomes, Genetics March 2019 9: 955-968; https://doi.org/10.1534/g3.118.200910
• Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode Caenorhabditis remanei

  Kristin L. Sikkink, Rose M. Reynolds, Catherine M. Ituarte, William A. Cresko, Patrick C. Phillips

  G3: Genes, Genomes, Genetics March 2019 9: 969-982; https://doi.org/10.1534/g3.118.200017