February 2019 Table of Contents

Investigations

• SNZ3 Encodes a PLP Synthase Involved in Thiamine Synthesis in Saccharomyces cerevisiae

  Michael D. Paxhia, Diana M. Downs

  G3: Genes, Genomes, Genetics February 2019 9: 335-344; https://doi.org/10.1534/g3.118.200831
• Investigation of the Developmental Requirements of Drosophila HP1 and Insulator Protein Partner, HIPP1

  Steve E. Glenn, Pamela K. Geyer

  G3: Genes, Genomes, Genetics February 2019 9: 345-357; https://doi.org/10.1534/g3.118.200705
• Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression

  Stephen J. Bush, Mary E. B. McCulloch, Charity Muriuki, Mazdak Salavati, Gemma M. Davis, Iseabail L. Farquhar, Zofia M. Lisowski, Alan L. Archibald, David A. Hume, Emily L. Clark

  G3: Genes, Genomes, Genetics February 2019 9: 359-373; https://doi.org/10.1534/g3.118.200810
• A Very Oil Yellow1 Modifier of the Oil Yellow1-N1989 Allele Uncovers a Cryptic Phenotypic Impact of Cis-regulatory Variation in Maize

  Rajdeep S. Khangura, Sandeep Marla, Bala P. Venkata, Nicholas J. Heller, Gurmukh S. Johal, Brian P. Dilkes

  G3: Genes, Genomes, Genetics February 2019 9: 375-390; https://doi.org/10.1534/g3.118.200798
• Optimizing Genomic Selection for a Sorghum Breeding Program in Haiti: A Simulation Study

  Kebede T. Muleta, Gael Pressoir, Geoffrey P. Morris

  G3: Genes, Genomes, Genetics February 2019 9: 391-401; https://doi.org/10.1534/g3.118.200932
• A Transgenic Flock House Virus Replicon Reveals an RNAi Independent Antiviral Mechanism Acting in Drosophila Follicular Somatic Cells

  Nelson Martins, Aurélie Lemoine, Estelle Santiago, Simona Paro, Jean-Luc Imler, Carine Meignin

  G3: Genes, Genomes, Genetics February 2019 9: 403-412; https://doi.org/10.1534/g3.118.200872
• Yeast Models of Phosphomannomutase 2 Deficiency, a Congenital Disorder of Glycosylation

  Jessica P. Lao, Nina DiPrimio, Madeleine Prangley, Feba S. Sam, Joshua D. Mast, Ethan O. Perlstein

  G3: Genes, Genomes, Genetics February 2019 9: 413-423; https://doi.org/10.1534/g3.118.200934
• Complex Structural PPT1 Variant Associated with Non-syndromic Canine Retinal Degeneration

  Leonardo Murgiano, Doreen Becker, Dina Torjman, Jessica K. Niggel, Ausra Milano, Cheryl Cullen, Rui Feng, Fan Wang, Vidhya Jagannathan, Sue Pearce-Kelling, Martin L. Katz, Tosso Leeb, Gustavo D. Aguirre

  G3: Genes, Genomes, Genetics February 2019 9: 425-437; https://doi.org/10.1534/g3.118.200859
• A Statistical Procedure for Genome-Wide Detection of QTL Hotspots Using Public Databases with Application to Rice

  Man-Hsia Yang, Dong-Hong Wu, Chen-Hung Kao

  G3: Genes, Genomes, Genetics February 2019 9: 439-452; https://doi.org/10.1534/g3.118.200922
• GAL4 Drivers Specific for Type Ib and Type Is Motor Neurons in Drosophila

  Juan J. Pérez-Moreno, Cahir J. O’Kane

  G3: Genes, Genomes, Genetics February 2019 9: 453-462; https://doi.org/10.1534/g3.118.200809
• Using Next-Generation Sequencing Transcriptomics To Determine Markers of Post-traumatic Symptoms: Preliminary Findings from a Post-deployment Cohort of Soldiers

  Cathy Boscarino, Thomas Nalpathamkalam, Giovanna Pellecchia, Weili Li, Bhooma Thiruvahindrapuram, Daniele Merico

  G3: Genes, Genomes, Genetics February 2019 9: 463-471; https://doi.org/10.1534/g3.118.200516
• Determining the Genetic Architecture of Reproductive Stage Drought Tolerance in Wheat Using a Correlated Trait and Correlated Marker Effect Model

  Rudy Dolferus, Saravanan Thavamanikumar, Harriet Sangma, Sue Kleven, Xiaomei Wallace, Kerrie Forrest, Gregory Rebetzke, Matthew Hayden, Lauren Borg, Alison Smith, Brian Cullis

  G3: Genes, Genomes, Genetics February 2019 9: 473-489; https://doi.org/10.1534/g3.118.200835
• Composition of the Survival Motor Neuron (SMN) Complex in Drosophila melanogaster

  A. Gregory Matera, Amanda C. Raimer, Casey A. Schmidt, Jo A. Kelly, Gaith N. Droby, David Baillat, Sara ten Have, Angus I. Lamond, Eric J. Wagner, Kelsey M. Gray

  G3: Genes, Genomes, Genetics February 2019 9: 491-503; https://doi.org/10.1534/g3.118.200874
• Mapping Oat Crown Rust Resistance Gene Pc45 Confirms Association with PcKM

  Aida Z. Kebede, Jayelle Friesen-Enns, Belaghihalli N. Gnanesh, Jim G. Menzies, Jennifer W. Mitchell Fetch, James Chong, Aaron D. Beattie, Edyta Paczos-Grzęda, Curt A. McCartney

  G3: Genes, Genomes, Genetics February 2019 9: 505-511; https://doi.org/10.1534/g3.118.200757
• Metformin Affects Heme Function as a Possible Mechanism of Action

  Xiyan Li, Xin Wang, Michael P. Snyder

  G3: Genes, Genomes, Genetics February 2019 9: 513-522; https://doi.org/10.1534/g3.118.200803
• Integrated Analysis of miRNA and mRNA Expression Profiles Reveals Functional miRNA-Targets in Development Testes of Small Tail Han Sheep

  Man Bai, Limin Sun, Chao Jia, Jiarong Li, Yue Han, Hang Liu, Yang Chen, Huaizhi Jiang

  G3: Genes, Genomes, Genetics February 2019 9: 523-533; https://doi.org/10.1534/g3.118.200947
• Identifying Pseudomonas syringae Type III Secreted Effector Function via a Yeast Genomic Screen

  Amy Huei-Yi Lee, D. Patrick Bastedo, Ji-Young Youn, Timothy Lo, Maggie A. Middleton, Inga Kireeva, Jee Yeon Lee, Sara Sharifpoor, Anastasia Baryshnikova, Jianfeng Zhang, Pauline W. Wang, Sergio G. Peisajovich, Michael Constanzo, Brenda J. Andrews, Charles M. Boone, Darrell Desveaux, David S. Guttman

  G3: Genes, Genomes, Genetics February 2019 9: 535-547; https://doi.org/10.1534/g3.118.200877
• Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

  Emily L. Wynn, Alan C. Christensen

  G3: Genes, Genomes, Genetics February 2019 9: 549-559; https://doi.org/10.1534/g3.118.200948
• A Noisy Analog-to-Digital Converter Connects Cytosolic Calcium Bursts to Transcription Factor Nuclear Localization Pulses in Yeast

  Ian S. Hsu, Bob Strome, Sergey Plotnikov, Alan M. Moses

  G3: Genes, Genomes, Genetics February 2019 9: 561-570; https://doi.org/10.1534/g3.118.200841
• A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to Fusarium verticillioides Infection of Seedlings in a Maize Diversity Panel

  Lorenzo Stagnati, Alessandra Lanubile, Luis F. Samayoa, Mario Bragalanti, Paola Giorni, Matteo Busconi, James B. Holland, Adriano Marocco

  G3: Genes, Genomes, Genetics February 2019 9: 571-579; https://doi.org/10.1534/g3.118.200916
• Activation of the Bile Acid Pathway and No Observed Antimicrobial Peptide Sequences in the Skin of a Poison Frog

  Megan L. Civitello, Robert Denton, Michael A. Zasloff, John H. Malone

  G3: Genes, Genomes, Genetics February 2019 9: 581-589; https://doi.org/10.1534/g3.118.200880
• Generation of H11-albumin-rtTA Transgenic Mice: A Tool for Inducible Gene Expression in the Liver

  Yu-Shan Li, Ran-Ran Meng, Xiu Chen, Cui-Ling Shang, Hong-Bin Li, Tao-Jun Zhang, Hua-Yang Long, Hui-Qi Li, Yi-Jing Wang, Feng-Chao Wang

  G3: Genes, Genomes, Genetics February 2019 9: 591-599; https://doi.org/10.1534/g3.118.200963
• A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding

  Osval A. Montesinos-López, Javier Martín-Vallejo, José Crossa, Daniel Gianola, Carlos M. Hernández-Suárez, Abelardo Montesinos-López, Philomin Juliana, Ravi Singh

  G3: Genes, Genomes, Genetics February 2019 9: 601-618; https://doi.org/10.1534/g3.118.200998