June 2018 Table of Contents

Investigations

• The Atypical Rho GTPase CHW-1 Works with SAX-3/Robo To Mediate Axon Guidance in Caenorhabditis elegans

  Jamie K. Alan, Sara K. Robinson, Katie L. Magsig, Rafael S. Demarco, Erik A. Lundquist

  G3: Genes, Genomes, Genetics June 2018 8: 1885-1895; https://doi.org/10.1534/g3.118.200148
• Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.)

  Rachel F. Begheyn, Steven A. Yates, Timothy Sykes, Bruno Studer

  G3: Genes, Genomes, Genetics June 2018 8: 1897-1908; https://doi.org/10.1534/g3.117.300550
• Accounting for Genotype-by-Environment Interactions and Residual Genetic Variation in Genomic Selection for Water-Soluble Carbohydrate Concentration in Wheat

  Ben Ovenden, Andrew Milgate, Len J. Wade, Greg J. Rebetzke, James B. Holland

  G3: Genes, Genomes, Genetics June 2018 8: 1909-1919; https://doi.org/10.1534/g3.118.200038
• Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways

  Sarah N. Anderson, Gregory J. Zynda, Jawon Song, Zhaoxue Han, Matthew W. Vaughn, Qing Li, Nathan M. Springer

  G3: Genes, Genomes, Genetics June 2018 8: 1921-1932; https://doi.org/10.1534/g3.118.200284
• Effect of Larval Nutrition on Maternal mRNA Contribution to the Drosophila Egg

  Amanda E. Crofton, Emily L. Cartwright, Anna A. Feitzinger, Susan E. Lott

  G3: Genes, Genomes, Genetics June 2018 8: 1933-1941; https://doi.org/10.1534/g3.118.200283
• The Pseudokinase Domain of Saccharomyces cerevisiae Tra1 Is Required for Nuclear Localization and Incorporation into the SAGA and NuA4 Complexes

  Matthew D. Berg, Julie Genereaux, Jim Karagiannis, Christopher J. Brandl

  G3: Genes, Genomes, Genetics June 2018 8: 1943-1957; https://doi.org/10.1534/g3.118.200288
• diploS/HIC: An Updated Approach to Classifying Selective Sweeps

  Andrew D. Kern, Daniel R. Schrider

  G3: Genes, Genomes, Genetics June 2018 8: 1959-1970; https://doi.org/10.1534/g3.118.200262
• Sex Differences in Recombination in Sticklebacks

  Jason M. Sardell, Changde Cheng, Andrius J. Dagilis, Asano Ishikawa, Jun Kitano, Catherine L. Peichel, Mark Kirkpatrick

  G3: Genes, Genomes, Genetics June 2018 8: 1971-1983; https://doi.org/10.1534/g3.118.200166
• Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family

  Patrícia Domingues de Freitas, Fernando Luis Mendez, Karla Chávez-Congrains, Pedro Manoel Galetti, Luiz Lehmann Coutinho, Alcides Pissinatti, Carlos Daniel Bustamante

  G3: Genes, Genomes, Genetics June 2018 8: 1985-1991; https://doi.org/10.1534/g3.118.200153
• Functional Analysis of Hif1 Histone Chaperone in Saccharomyces cerevisiae

  Nora S. Dannah, Syed Nabeel-Shah, Christoph F. Kurat, Sarah A. Sabatinos, Jeffrey Fillingham

  G3: Genes, Genomes, Genetics June 2018 8: 1993-2006; https://doi.org/10.1534/g3.118.200229
• Phylogenetic and Phylogenomic Definition of Rhizopus Species

  Andrii P. Gryganskyi, Jacob Golan, Somayeh Dolatabadi, Stephen Mondo, Sofia Robb, Alexander Idnurm, Anna Muszewska, Kamil Steczkiewicz, Sawyer Masonjones, Hui-Ling Liao, Michael T. Gajdeczka, Felicia Anike, Antonina Vuek, Iryna M. Anishchenko, Kerstin Voigt, G. Sybren de Hoog, Matthew E. Smith, Joseph Heitman, Rytas Vilgalys, Jason E. Stajich

  G3: Genes, Genomes, Genetics June 2018 8: 2007-2018; https://doi.org/10.1534/g3.118.200235
• A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors

  Swaraj Basu, Erik Larsson

  G3: Genes, Genomes, Genetics June 2018 8: 2019-2025; https://doi.org/10.1534/g3.118.200296
• Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila

  Vallari Shukla, Neena Dhiman, Prajna Nayak, Neelesh Dahanukar, Girish Deshpande, Girish S. Ratnaparkhi

  G3: Genes, Genomes, Genetics June 2018 8: 2027-2041; https://doi.org/10.1534/g3.118.200192
• RNA Polymerase II Transcription Attenuation at the Yeast DNA Repair Gene, DEF1, Involves Sen1-Dependent and Polyadenylation Site-Dependent Termination

  Courtney Whalen, Christine Tuohy, Thomas Tallo, James W. Kaufman, Claire Moore, Jason N. Kuehner

  G3: Genes, Genomes, Genetics June 2018 8: 2043-2058; https://doi.org/10.1534/g3.118.200072
• Mapping of Leaf Rust Resistance Genes and Molecular Characterization of the 2NS/2AS Translocation in the Wheat Cultivar Jagger

  Shulin Xue, James A. Kolmer, Shuwen Wang, Liuling Yan

  G3: Genes, Genomes, Genetics June 2018 8: 2059-2065; https://doi.org/10.1534/g3.118.200058
• A Cloning-Free Method for CRISPR/Cas9-Mediated Genome Editing in Fission Yeast

  Xiao-Ran Zhang, Jia-Bei He, Yi-Zheng Wang, Li-Lin Du

  G3: Genes, Genomes, Genetics June 2018 8: 2067-2077; https://doi.org/10.1534/g3.118.200164
• Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA

  Avantika Lal, Sandeep Krishna, Aswin Sai Narain Seshasayee

  G3: Genes, Genomes, Genetics June 2018 8: 2079-2089; https://doi.org/10.1534/g3.118.200265
• Rapid Integration of Multi-copy Transgenes Using Optogenetic Mutagenesis in Caenorhabditis elegans

  Kentaro Noma, Yishi Jin

  G3: Genes, Genomes, Genetics June 2018 8: 2091-2097; https://doi.org/10.1534/g3.118.200158
• Multiple Arginine Residues Are Methylated in Drosophila Mre11 and Required for Survival Following Ionizing Radiation

  Qing Yuan, Ran Tian, Haiying Zhao, Lijuan Li, Xiaolin Bi

  G3: Genes, Genomes, Genetics June 2018 8: 2099-2106; https://doi.org/10.1534/g3.118.200298
• TAS2R38 Predisposition to Bitter Taste Associated with Differential Changes in Vegetable Intake in Response to a Community-Based Dietary Intervention

  Larissa Calancie, Thomas C. Keyserling, Lindsey Smith Taillie, Kimberly Robasky, Cam Patterson, Alice S. Ammerman, Jonathan C. Schisler

  G3: Genes, Genomes, Genetics June 2018 8: 2107-2119; https://doi.org/10.1534/g3.118.300547
• Ancestral State Reconstruction of the Apoptosis Machinery in the Common Ancestor of Eukaryotes

  Joanna Klim, Arkadiusz Gładki, Roza Kucharczyk, Urszula Zielenkiewicz, Szymon Kaczanowski

  G3: Genes, Genomes, Genetics June 2018 8: 2121-2134; https://doi.org/10.1534/g3.118.200295