May 2018 Table of Contents

Investigations

• Comparative Transcriptomics Among Four White Pine Species

  Ethan A. G. Baker, Jill L. Wegrzyn, Uzay U. Sezen, Taylor Falk, Patricia E. Maloney, Detlev R. Vogler, Annette Delfino-Mix, Camille Jensen, Jeffry Mitton, Jessica Wright, Brian Knaus, Hardeep Rai, Richard Cronn, Daniel Gonzalez-Ibeas, Hans A. Vasquez-Gross, Randi A. Famula, Jun-Jun Liu, Lara M. Kueppers, David B. Neale

  G3: Genes, Genomes, Genetics May 2018 8: 1461-1474; https://doi.org/10.1534/g3.118.200257
• Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria

  Christoph Müller, Milica Krunic, Judith Wendt, Arndt von Haeseler, Ichiro Okamoto

  G3: Genes, Genomes, Genetics May 2018 8: 1475-1480; https://doi.org/10.1534/g3.117.300394
• Loci That Control Nonlinear, Interdependent Responses to Combinations of Drought and Nitrogen Limitation

  Megan M. Chang, Danielle Allery Nail, Toni Kazic, Susan J. Simmons, Ann E. Stapleton

  G3: Genes, Genomes, Genetics May 2018 8: 1481-1496; https://doi.org/10.1534/g3.118.200123
• A Flow Cytometry-Based Phenotypic Screen To Identify Novel Endocytic Factors in Saccharomyces cerevisiae

  Kristie Wrasman, Salvatore L. Alioto, Yorke Zhang, Kyle Hoban, Marjon Khairy, Bruce L. Goode, Beverly Wendland

  G3: Genes, Genomes, Genetics May 2018 8: 1497-1512; https://doi.org/10.1534/g3.118.200102
• High-Resolution Analysis of the Efficiency, Heritability, and Editing Outcomes of CRISPR/Cas9-Induced Modifications of NCED4 in Lettuce (Lactuca sativa)

  Lien D. Bertier, Mily Ron, Heqiang Huo, Kent J. Bradford, Anne B. Britt, Richard W. Michelmore

  G3: Genes, Genomes, Genetics May 2018 8: 1513-1521; https://doi.org/10.1534/g3.117.300396
• Identification of General Patterns of Sex-Biased Expression in Daphnia, a Genus with Environmental Sex Determination

  Cécile Molinier, Céline M.O. Reisser, Peter Fields, Adeline Ségard, Yan Galimov, Christoph R. Haag

  G3: Genes, Genomes, Genetics May 2018 8: 1523-1533; https://doi.org/10.1534/g3.118.200174
• The Molecular Chaperone HSP90 Promotes Notch Signaling in the Germline of Caenorhabditis elegans

  James L. Lissemore, Elyse Connors, Ying Liu, Li Qiao, Bing Yang, Mark L. Edgley, Stephane Flibotte, Jon Taylor, Vinci Au, Donald G. Moerman, Eleanor M. Maine

  G3: Genes, Genomes, Genetics May 2018 8: 1535-1544; https://doi.org/10.1534/g3.118.300551
• A Nonsense Variant in the ACADVL Gene in German Hunting Terriers with Exercise Induced Metabolic Myopathy

  Vincent Lepori, Franziska Mühlhause, Adrian C. Sewell, Vidhya Jagannathan, Nils Janzen, Marco Rosati, Filipe Miguel Maximiano Alves de Sousa, Aurélie Tschopp, Gertraud Schüpbach, Kaspar Matiasek, Andrea Tipold, Tosso Leeb, Marion Kornberg

  G3: Genes, Genomes, Genetics May 2018 8: 1545-1554; https://doi.org/10.1534/g3.118.200084
• Kinesin 6 Regulation in Drosophila Female Meiosis by the Non-conserved N- and C- Terminal Domains

  Arunika Das, Jeffry Cesario, Anna Maria Hinman, Janet K. Jang, Kim S. McKim

  G3: Genes, Genomes, Genetics May 2018 8: 1555-1569; https://doi.org/10.1534/g3.117.300571
• Genomic Locus Modulating IOP in the BXD RI Mouse Strains

  Rebecca King, Ying Li, Jiaxing Wang, Felix L. Struebing, Eldon E. Geisert

  G3: Genes, Genomes, Genetics May 2018 8: 1571-1578; https://doi.org/10.1534/g3.118.200190
• Rapid Nuclear Exclusion of Hcm1 in Aging Saccharomyces cerevisiae Leads to Vacuolar Alkalization and Replicative Senescence

  Ata Ghavidel, Kunal Baxi, Martin Prusinkiewicz, Cynthia Swan, Zach R. Belak, Christopher H. Eskiw, Carlos E. Carvalho, Troy A. Harkness

  G3: Genes, Genomes, Genetics May 2018 8: 1579-1592; https://doi.org/10.1534/g3.118.200161
• Repeat-Specific Functions for the C-Terminal Domain of RNA Polymerase II in Budding Yeast

  Michael Babokhov, Mohammad M. Mosaheb, Richard W. Baker, Stephen M. Fuchs

  G3: Genes, Genomes, Genetics May 2018 8: 1593-1601; https://doi.org/10.1534/g3.118.200086
• Differential Expression Profiling of Microspores During the Early Stages of Isolated Microspore Culture Using the Responsive Barley Cultivar Gobernadora

  Sébastien Bélanger, Suzanne Marchand, Pierre-Étienne Jacques, Blake Meyers, François Belzile

  G3: Genes, Genomes, Genetics May 2018 8: 1603-1614; https://doi.org/10.1534/g3.118.200208
• Tight Regulation of Srs2 Helicase Activity Is Crucial for Proper Functioning of DNA Repair Mechanisms

  Alex Bronstein, Shay Bramson, Keren Shemesh, Batia Liefshitz, Martin Kupiec

  G3: Genes, Genomes, Genetics May 2018 8: 1615-1626; https://doi.org/10.1534/g3.118.200181
• Inducible Genome Editing with Conditional CRISPR/Cas9 Mice

  Alexandra Katigbak, Francis Robert, Marilène Paquet, Jerry Pelletier

  G3: Genes, Genomes, Genetics May 2018 8: 1627-1635; https://doi.org/10.1534/g3.117.300327
• A Host-Pathogen Interaction Screen Identifies ada2 as a Mediator of Candida glabrata Defenses Against Reactive Oxygen Species

  Ilias Kounatidis, Lauren Ames, Rupal Mistry, Hsueh-lui Ho, Ken Haynes, Petros Ligoxygakis

  G3: Genes, Genomes, Genetics May 2018 8: 1637-1647; https://doi.org/10.1534/g3.118.200182
• Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform

  Shan Wei, Zachary R. Weiss, Zev Williams

  G3: Genes, Genomes, Genetics May 2018 8: 1649-1657; https://doi.org/10.1534/g3.118.200087
• Functional Validation of Candidate Genes Detected by Genomic Feature Models

  Palle Duun Rohde, Solveig Østergaard, Torsten Nygaard Kristensen, Peter Sørensen, Volker Loeschcke, Trudy F. C. Mackay, Pernille Sarup

  G3: Genes, Genomes, Genetics May 2018 8: 1659-1668; https://doi.org/10.1534/g3.118.200082
• Russian Doll Genes and Complex Chromosome Rearrangements in Oxytricha trifallax

  Jasper Braun, Lukas Nabergall, Rafik Neme, Laura F. Landweber, Masahico Saito, Nataša Jonoska

  G3: Genes, Genomes, Genetics May 2018 8: 1669-1674; https://doi.org/10.1534/g3.118.200176
• A Whole Genome Assembly of the Horn Fly, Haematobia irritans, and Prediction of Genes with Roles in Metabolism and Sex Determination

  Kranti Konganti, Felix D. Guerrero, Faye Schilkey, Peter Ngam, Jennifer L. Jacobi, Pooja E. Umale, Adalberto A. Perez de Leon, David W. Threadgill

  G3: Genes, Genomes, Genetics May 2018 8: 1675-1686; https://doi.org/10.1534/g3.118.200154
• Haplotype-Based Genome-Wide Prediction Models Exploit Local Epistatic Interactions Among Markers

  Yong Jiang, Renate H. Schmidt, Jochen C. Reif

  G3: Genes, Genomes, Genetics May 2018 8: 1687-1699; https://doi.org/10.1534/g3.117.300548
• Programmable Single and Multiplex Base-Editing in Bombyx mori Using RNA-Guided Cytidine Deaminases

  Yufeng Li, Sanyuan Ma, Le Sun, Tong Zhang, Jiasong Chang, Wei Lu, Xiaoxu Chen, Yue Liu, Xiaogang Wang, Run Shi, Ping Zhao, Qingyou Xia

  G3: Genes, Genomes, Genetics May 2018 8: 1701-1709; https://doi.org/10.1534/g3.118.200134
• Inter-replicon Gene Flow Contributes to Transcriptional Integration in the Sinorhizobium meliloti Multipartite Genome

  George C. diCenzo, Deelaka Wellappili, G. Brian Golding, Turlough M. Finan

  G3: Genes, Genomes, Genetics May 2018 8: 1711-1720; https://doi.org/10.1534/g3.117.300405
• Historical Datasets Support Genomic Selection Models for the Prediction of Cotton Fiber Quality Phenotypes Across Multiple Environments

  Washington Gapare, Shiming Liu, Warren Conaty, Qian-Hao Zhu, Vanessa Gillespie, Danny Llewellyn, Warwick Stiller, Iain Wilson

  G3: Genes, Genomes, Genetics May 2018 8: 1721-1732; https://doi.org/10.1534/g3.118.200140
• Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability

  Emma S.T. Aller, Lea M. Jagd, Daniel J. Kliebenstein, Meike Burow

  G3: Genes, Genomes, Genetics May 2018 8: 1733-1746; https://doi.org/10.1534/g3.118.200127
• Site-Specific Fat-1 Knock-In Enables Significant Decrease of n-6PUFAs/n-3PUFAs Ratio in Pigs

  Mengjing Li, Hongsheng Ouyang, Hongming Yuan, Jianing Li, Zicong Xie, Kankan Wang, Tingting Yu, Minghao Liu, Xue Chen, Xiaochun Tang, Huping Jiao, Daxin Pang

  G3: Genes, Genomes, Genetics May 2018 8: 1747-1754; https://doi.org/10.1534/g3.118.200114
• Distinguishing Among Evolutionary Forces Acting on Genome-Wide Base Composition: Computer Simulation Analysis of Approximate Methods for Inferring Site Frequency Spectra of Derived Mutations

  Tomotaka Matsumoto, Hiroshi Akashi

  G3: Genes, Genomes, Genetics May 2018 8: 1755-1769; https://doi.org/10.1534/g3.117.300512
• A Bayesian Genomic Regression Model with Skew Normal Random Errors

  Paulino Pérez-Rodríguez, Rocío Acosta-Pech, Sergio Pérez-Elizalde, Ciro Velasco Cruz, Javier Suárez Espinosa, José Crossa

  G3: Genes, Genomes, Genetics May 2018 8: 1771-1785; https://doi.org/10.1534/g3.117.300406
• Effects of Larval Density on Gene Regulation in Caenorhabditis elegans During Routine L1 Synchronization

  Io Long Chan, Oliver J. Rando, Colin C. Conine

  G3: Genes, Genomes, Genetics May 2018 8: 1787-1793; https://doi.org/10.1534/g3.118.200056
• Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates

  Thibault Lorin, Frédéric G. Brunet, Vincent Laudet, Jean-Nicolas Volff

  G3: Genes, Genomes, Genetics May 2018 8: 1795-1806; https://doi.org/10.1534/g3.118.200201
• Vps74 Connects the Golgi Apparatus and Telomeres in Saccharomyces cerevisiae

  Joana Rodrigues, Peter Banks, David Lydall

  G3: Genes, Genomes, Genetics May 2018 8: 1807-1816; https://doi.org/10.1534/g3.118.200172
• Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry

  Dominique D. A. Pincot, Thomas J. Poorten, Michael A. Hardigan, Julia M. Harshman, Charlotte B. Acharya, Glenn S. Cole, Thomas R. Gordon, Michelle Stueven, Patrick P. Edger, Steven J. Knapp

  G3: Genes, Genomes, Genetics May 2018 8: 1817-1828; https://doi.org/10.1534/g3.118.200129
• H3K4 Methylation Dependent and Independent Chromatin Regulation by JHD2 and SET1 in Budding Yeast

  Kwan Yin Lee, Ziyan Chen, River Jiang, Marc D. Meneghini

  G3: Genes, Genomes, Genetics May 2018 8: 1829-1839; https://doi.org/10.1534/g3.118.200151
• Identification of Proteins Required for Precise Positioning of Apc2 in Dendrites

  Alexis T. Weiner, Dylan Y. Seebold, Nick L. Michael, Michelle Guignet, Chengye Feng, Brandon Follick, Brandon A. Yusko, Nathan P. Wasilko, Pedro Torres-Gutierrez, Melissa M. Rolls

  G3: Genes, Genomes, Genetics May 2018 8: 1841-1853; https://doi.org/10.1534/g3.118.200205