The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae
David B. Neale, Patrick E. McGuire, Nicholas C. Wheeler, Kristian A. Stevens, Marc W. Crepeau, Charis Cardeno, Aleksey V. Zimin, Daniela Puiu, Geo M. Pertea, U. Uzay Sezen, Claudio Casola, Tomasz E. Koralewski, Robin Paul, Daniel Gonzalez-Ibeas, Sumaira Zaman, Richard Cronn, Mark Yandell, Carson Holt, Charles H. Langley, James A. Yorke, Steven L. Salzberg and Jill L. Wegrzyn
G3: Genes, Genomes, Genetics September 1, 2017 vol. 7 no. 9 3157-3167; https://doi.org/10.1534/g3.117.300078
Open Access
David B. Neale
*Department of Plant Sciences, University of California, Davis, California 95616
Patrick E. McGuire
*Department of Plant Sciences, University of California, Davis, California 95616
Nicholas C. Wheeler
*Department of Plant Sciences, University of California, Davis, California 95616
Kristian A. Stevens
†Department of Evolution and Ecology, University of California, Davis, California 95616
Marc W. Crepeau
†Department of Evolution and Ecology, University of California, Davis, California 95616
Charis Cardeno
†Department of Evolution and Ecology, University of California, Davis, California 95616
Aleksey V. Zimin
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Daniela Puiu
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Geo M. Pertea
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
U. Uzay Sezen
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Claudio Casola
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Tomasz E. Koralewski
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Robin Paul
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Daniel Gonzalez-Ibeas
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Sumaira Zaman
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Richard Cronn
‡‡Pacific Northwest Research Station, United States Forest Service, Corvallis, Oregon 97331
Mark Yandell
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Carson Holt
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Charles H. Langley
†Department of Evolution and Ecology, University of California, Davis, California 95616
James A. Yorke
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
Steven L. Salzberg
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
***Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218
†††Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218
‡‡‡Department of Biostatistics, Johns Hopkins University, Baltimore, Maryland 21205
Jill L. Wegrzyn
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269

Data supplements
Supplemental Material for Neale et al., 2017
Supplemental Material
- File S1 -
Consists of supplementary information about Methods and Results with additional tables (Tables S1 through S4, S6, S7, and S13 through S17). (.pdf)
- File S2 -
Consists of the supplemental figures (Figures S1 through S15). (.pdf)
- File S3 -
Consists of a spreadsheet file with the remaining supplemental tables as tabs (Tables S5 and S8 through S12). (.xlsx)
- File S1 -
PUBLICATION INFORMATION
ARTICLE CLASSIFICATION
The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae
David B. Neale, Patrick E. McGuire, Nicholas C. Wheeler, Kristian A. Stevens, Marc W. Crepeau, Charis Cardeno, Aleksey V. Zimin, Daniela Puiu, Geo M. Pertea, U. Uzay Sezen, Claudio Casola, Tomasz E. Koralewski, Robin Paul, Daniel Gonzalez-Ibeas, Sumaira Zaman, Richard Cronn, Mark Yandell, Carson Holt, Charles H. Langley, James A. Yorke, Steven L. Salzberg and Jill L. Wegrzyn
G3: Genes, Genomes, Genetics September 1, 2017 vol. 7 no. 9 3157-3167; https://doi.org/10.1534/g3.117.300078
Open Access
David B. Neale
*Department of Plant Sciences, University of California, Davis, California 95616
Patrick E. McGuire
*Department of Plant Sciences, University of California, Davis, California 95616
Nicholas C. Wheeler
*Department of Plant Sciences, University of California, Davis, California 95616
Kristian A. Stevens
†Department of Evolution and Ecology, University of California, Davis, California 95616
Marc W. Crepeau
†Department of Evolution and Ecology, University of California, Davis, California 95616
Charis Cardeno
†Department of Evolution and Ecology, University of California, Davis, California 95616
Aleksey V. Zimin
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Daniela Puiu
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Geo M. Pertea
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
U. Uzay Sezen
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Claudio Casola
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Tomasz E. Koralewski
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Robin Paul
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Daniel Gonzalez-Ibeas
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Sumaira Zaman
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Richard Cronn
‡‡Pacific Northwest Research Station, United States Forest Service, Corvallis, Oregon 97331
Mark Yandell
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Carson Holt
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Charles H. Langley
†Department of Evolution and Ecology, University of California, Davis, California 95616
James A. Yorke
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
Steven L. Salzberg
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
***Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218
†††Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218
‡‡‡Department of Biostatistics, Johns Hopkins University, Baltimore, Maryland 21205
Jill L. Wegrzyn
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae
David B. Neale, Patrick E. McGuire, Nicholas C. Wheeler, Kristian A. Stevens, Marc W. Crepeau, Charis Cardeno, Aleksey V. Zimin, Daniela Puiu, Geo M. Pertea, U. Uzay Sezen, Claudio Casola, Tomasz E. Koralewski, Robin Paul, Daniel Gonzalez-Ibeas, Sumaira Zaman, Richard Cronn, Mark Yandell, Carson Holt, Charles H. Langley, James A. Yorke, Steven L. Salzberg and Jill L. Wegrzyn
G3: Genes, Genomes, Genetics September 1, 2017 vol. 7 no. 9 3157-3167; https://doi.org/10.1534/g3.117.300078
Open Access
David B. Neale
*Department of Plant Sciences, University of California, Davis, California 95616
Patrick E. McGuire
*Department of Plant Sciences, University of California, Davis, California 95616
Nicholas C. Wheeler
*Department of Plant Sciences, University of California, Davis, California 95616
Kristian A. Stevens
†Department of Evolution and Ecology, University of California, Davis, California 95616
Marc W. Crepeau
†Department of Evolution and Ecology, University of California, Davis, California 95616
Charis Cardeno
†Department of Evolution and Ecology, University of California, Davis, California 95616
Aleksey V. Zimin
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Daniela Puiu
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
Geo M. Pertea
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
U. Uzay Sezen
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Claudio Casola
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Tomasz E. Koralewski
††Department of Ecosystem Science and Management, Texas A&M University, College Station, Texas 77843
Robin Paul
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Daniel Gonzalez-Ibeas
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Sumaira Zaman
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269
Richard Cronn
‡‡Pacific Northwest Research Station, United States Forest Service, Corvallis, Oregon 97331
Mark Yandell
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Carson Holt
§§Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112
Charles H. Langley
†Department of Evolution and Ecology, University of California, Davis, California 95616
James A. Yorke
‡Institute for Physical Sciences and Technology, University of Maryland, College Park, Maryland 20742
Steven L. Salzberg
§Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205
***Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218
†††Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218
‡‡‡Department of Biostatistics, Johns Hopkins University, Baltimore, Maryland 21205
Jill L. Wegrzyn
**Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269