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G3: Genes | Genomes | Genetics

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April 2016 Table of Contents

Meeting Report

  • Evolution of Plant Phenotypes, from Genomes to Traits
    Josep M. Casacuberta, Scott Jackson, Olivier Panaud, Michael Purugganan, Jonathan Wendel
    G3: Genes, Genomes, Genetics April 2016 6: 775-778; https://doi.org/10.1534/g3.115.025502

Investigations

  • Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici
    Megan C. McDonald, Lachlan McGinness, James K. Hane, Angela H. Williams, Andrew Milgate, Peter S. Solomon
    G3: Genes, Genomes, Genetics April 2016 6: 779-791; https://doi.org/10.1534/g3.115.025197
  • Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing
    Richard S. Fletcher, David Herrmann, Jack L. Mullen, Qinfei Li, Daniel R. Schrider, Nicholas Price, Junjiang Lin, Kelsi Grogan, Andrew Kern, John K. McKay
    G3: Genes, Genomes, Genetics April 2016 6: 793-803; https://doi.org/10.1534/g3.115.021279
  • Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility
    Pavle Vrljicak, Shijie Tao, Gaurav K. Varshney, Helen Ngoc Bao Quach, Adita Joshi, Matthew C. LaFave, Shawn M. Burgess, Karuna Sampath
    G3: Genes, Genomes, Genetics April 2016 6: 805-817; https://doi.org/10.1534/g3.115.026849
  • Drak Is Required for Actomyosin Organization During Drosophila Cellularization
    Ashish B. Chougule, Mary C. Hastert, Jeffrey H. Thomas
    G3: Genes, Genomes, Genetics April 2016 6: 819-828; https://doi.org/10.1534/g3.115.026401
  • A Plasmid Set for Efficient Bacterial Artificial Chromosome (BAC) Transgenesis in Zebrafish
    Fernando Fuentes, Eric Reynolds, Stephen W. Lewellis, Gayatri Venkiteswaran, Holger Knaut
    G3: Genes, Genomes, Genetics April 2016 6: 829-834; https://doi.org/10.1534/g3.115.026344
  • Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans
    Justin E. Anderson, Thomas J. Y. Kono, Robert M. Stupar, Michael B. Kantar, Peter L. Morrell
    G3: Genes, Genomes, Genetics April 2016 6: 835-843; https://doi.org/10.1534/g3.116.026914
  • Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes
    Yong-Bi Fu, Gregory W. Peterson, Yibo Dong
    G3: Genes, Genomes, Genetics April 2016 6: 845-856; https://doi.org/10.1534/g3.115.025775
  • Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis
    Nicholas A. Tinker, Wubishet A. Bekele, Jiro Hattori
    G3: Genes, Genomes, Genetics April 2016 6: 857-863; https://doi.org/10.1534/g3.115.024596
  • Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton
    Duke Pauli, Pedro Andrade-Sanchez, A. Elizabete Carmo-Silva, Elodie Gazave, Andrew N. French, John Heun, Douglas J. Hunsaker, Alexander E. Lipka, Tim L. Setter, Robert J. Strand, Kelly R. Thorp, Sam Wang, Jeffrey W. White, Michael A. Gore
    G3: Genes, Genomes, Genetics April 2016 6: 865-879; https://doi.org/10.1534/g3.115.023515
  • Barcode Sequencing Screen Identifies SUB1 as a Regulator of Yeast Pheromone Inducible Genes
    Anna Sliva, Zheng Kuang, Pamela B. Meluh, Jef D. Boeke
    G3: Genes, Genomes, Genetics April 2016 6: 881-892; https://doi.org/10.1534/g3.115.026757
  • Detecting and Quantifying Changing Selection Intensities from Time-Sampled Polymorphism Data
    Hyunjin Shim, Stefan Laurent, Sebastian Matuszewski, Matthieu Foll, Jeffrey D. Jensen
    G3: Genes, Genomes, Genetics April 2016 6: 893-904; https://doi.org/10.1534/g3.115.023200
  • Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis
    Matthew J. Markert, Ying Zhang, Metewo S. Enuameh, Steven M. Reppert, Scot A. Wolfe, Christine Merlin
    G3: Genes, Genomes, Genetics April 2016 6: 905-915; https://doi.org/10.1534/g3.116.027029
  • Efficient Genome Editing in Chicken DF-1 Cells Using the CRISPR/Cas9 System
    Yichun Bai, Linjie He, Pengcheng Li, Kun Xu, Simin Shao, Chonghua Ren, Zhongtian Liu, Zehui Wei, Zhiying Zhang
    G3: Genes, Genomes, Genetics April 2016 6: 917-923; https://doi.org/10.1534/g3.116.027706
  • Sexual Polyploidization in Medicago sativa L.: Impact on the Phenotype, Gene Transcription, and Genome Methylation
    Daniele Rosellini, Nicoletta Ferradini, Stefano Allegrucci, Stefano Capomaccio, Elisa Debora Zago, Paola Leonetti, Bachir Balech, Riccardo Aversano, Domenico Carputo, Lara Reale, Fabio Veronesi
    G3: Genes, Genomes, Genetics April 2016 6: 925-938; https://doi.org/10.1534/g3.115.026021
  • Genetically Determined Variation in Lysis Time Variance in the Bacteriophage φX174
    Christopher W. Baker, Craig R. Miller, Tanayott Thaweethai, Jeffrey Yuan, Meghan Hollibaugh Baker, Paul Joyce, Daniel M. Weinreich
    G3: Genes, Genomes, Genetics April 2016 6: 939-955; https://doi.org/10.1534/g3.115.024075
  • Whole Genome Comparison Reveals High Levels of Inbreeding and Strain Redundancy Across the Spectrum of Commercial Wine Strains of Saccharomyces cerevisiae
    Anthony R. Borneman, Angus H. Forgan, Radka Kolouchova, James A. Fraser, Simon A. Schmidt
    G3: Genes, Genomes, Genetics April 2016 6: 957-971; https://doi.org/10.1534/g3.115.025692
  • Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome
    Junchen Gu, Michael Stevens, Xiaoyun Xing, Daofeng Li, Bo Zhang, Jacqueline E. Payton, Eugene M. Oltz, James N. Jarvis, Kaiyu Jiang, Theodore Cicero, Joseph F. Costello, Ting Wang
    G3: Genes, Genomes, Genetics April 2016 6: 973-986; https://doi.org/10.1534/g3.115.025437
  • A HAND2 Loss-of-Function Mutation Causes Familial Ventricular Septal Defect and Pulmonary Stenosis
    Yu-Min Sun, Jun Wang, Xing-Biao Qiu, Fang Yuan, Ruo-Gu Li, Ying-Jia Xu, Xin-Kai Qu, Hong-Yu Shi, Xu-Min Hou, Ri-Tai Huang, Song Xue, Yi-Qing Yang
    G3: Genes, Genomes, Genetics April 2016 6: 987-992; https://doi.org/10.1534/g3.115.026518
  • High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation
    Timothy Hoggard, Ivan Liachko, Cassaundra Burt, Troy Meikle, Katherine Jiang, Gheorghe Craciun, Maitreya J. Dunham, Catherine A. Fox
    G3: Genes, Genomes, Genetics April 2016 6: 993-1012; https://doi.org/10.1534/g3.116.027904
  • Fluorescence In Situ Hybridization (FISH)-Based Karyotyping Reveals Rapid Evolution of Centromeric and Subtelomeric Repeats in Common Bean (Phaseolus vulgaris) and Relatives
    Aiko Iwata-Otsubo, Brittany Radke, Seth Findley, Brian Abernathy, C. Eduardo Vallejos, Scott A. Jackson
    G3: Genes, Genomes, Genetics April 2016 6: 1013-1022; https://doi.org/10.1534/g3.115.024984
  • Efficient Software for Multi-marker, Region-Based Analysis of GWAS Data
    Jaleal S. Sanjak, Anthony D. Long, Kevin R. Thornton
    G3: Genes, Genomes, Genetics April 2016 6: 1023-1030; https://doi.org/10.1534/g3.115.026013
  • The Stress Granule RNA-Binding Protein TIAR-1 Protects Female Germ Cells from Heat Shock in Caenorhabditis elegans
    Gabriela Huelgas-Morales, Carlos Giovanni Silva-García, Laura S. Salinas, David Greenstein, Rosa E. Navarro
    G3: Genes, Genomes, Genetics April 2016 6: 1031-1047; https://doi.org/10.1534/g3.115.026815
  • Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium
    Guillaume P. Ramstein, Joseph Evans, Shawn M. Kaeppler, Robert B. Mitchell, Kenneth P. Vogel, C. Robin Buell, Michael D. Casler
    G3: Genes, Genomes, Genetics April 2016 6: 1049-1062; https://doi.org/10.1534/g3.115.024950
  • Large-Scale Survey of Intraspecific Fitness and Cell Morphology Variation in a Protoploid Yeast Species
    Paul P. Jung, Anastasie Sigwalt, Shinsuke Ohnuki, Jacky de Montigny, Yoshikazu Ohya, Joseph Schacherer
    G3: Genes, Genomes, Genetics April 2016 6: 1063-1071; https://doi.org/10.1534/g3.115.026682
  • Embryonal Control of Yellow Seed Coat Locus ECY1 Is Related to Alanine and Phenylalanine Metabolism in the Seed Embryo of Brassica napus
    Fulin Wang, Jiewang He, Jianghua Shi, Tao Zheng, Fei Xu, Guanting Wu, Renhu Liu, Shengyi Liu
    G3: Genes, Genomes, Genetics April 2016 6: 1073-1081; https://doi.org/10.1534/g3.116.027110
  • Neurofibromin Loss of Function Drives Excessive Grooming in Drosophila
    Lanikea B. King, Marta Koch, Keith R. Murphy, Yoheilly Velazquez, William W. Ja, Seth M. Tomchik
    G3: Genes, Genomes, Genetics April 2016 6: 1083-1093; https://doi.org/10.1534/g3.115.026484
  • A Genetic Map for the Only Self-Fertilizing Vertebrate
    Akira Kanamori, Yosuke Sugita, Yasufumi Yuasa, Takamasa Suzuki, Kouichi Kawamura, Yoshinobu Uno, Katsuyasu Kamimura, Yoichi Matsuda, Catherine A. Wilson, Angel Amores, John H. Postlethwait, Koushirou Suga, Yoshitaka Sakakura
    G3: Genes, Genomes, Genetics April 2016 6: 1095-1106; https://doi.org/10.1534/g3.115.022699

Mutant Screen Reports

  • A Simultaneous Genetic Screen for Zygotic and Sterile Mutants in a Hermaphroditic Vertebrate (Kryptolebias marmoratus)
    Sofia Sucar, Ginger L. Moore, Melissa E. Ard, Brian C. Ring
    G3: Genes, Genomes, Genetics April 2016 6: 1107-1119; https://doi.org/10.1534/g3.115.022475
  • MEC-10 and MEC-19 Reduce the Neurotoxicity of the MEC-4(d) DEG/ENaC Channel in Caenorhabditis elegans
    Yushu Chen, Shashank Bharill, Robert O’Hagan, Ehud Y. Isacoff, Martin Chalfie
    G3: Genes, Genomes, Genetics April 2016 6: 1121-1130; https://doi.org/10.1534/g3.115.023507
  • Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress
    Kenneth D. Belanger, Nathaniel Larson, Jonathan Kahn, Dmitry Tkachev, Ahmet Ay
    G3: Genes, Genomes, Genetics April 2016 6: 1131-1139; https://doi.org/10.1534/g3.116.027011
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PUBLICATION INFORMATION

Volume 6 Issue 4, April 2016

G3: Genes|Genomes|Genetics: 6 (4)
  • Table of Contents (PDF)
  • Cover (PDF)
  • About the Cover
  • Index By Author
  • Editorial Board (PDF)
  • Most Read
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  • Sex Differences in Drosophila Somatic Gene Expression: Variation and Regulation by doublesex
  • Tissue-Specific Transcriptomes Reveal Gene Expression Trajectories in Two Maturing Skin Epithelial Layers in Zebrafish Embryos
  • Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
  • A Prospective Analysis of Genetic Variants Associated with Human Lifespan
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  • Meeting Report
  • Investigations
  • Mutant Screen Reports

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