March 2016 Table of Contents

Investigations

• Partial Dominance, Overdominance, Epistasis and QTL by Environment Interactions Contribute to Heterosis in Two Upland Cotton Hybrids

  Lianguang Shang, Yumei Wang, Shihu Cai, Xiaocui Wang, Yuhua Li, Abdugheni Abduweli, Jinping Hua

  G3: Genes, Genomes, Genetics March 2016 6: 499-507; https://doi.org/10.1534/g3.115.025809
• Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis

  Tereza Manousaki, Alexandros Tsakogiannis, John B. Taggart, Christos Palaiokostas, Dimitris Tsaparis, Jacques Lagnel, Dimitrios Chatziplis, Antonios Magoulas, Nikos Papandroulakis, Constantinos C. Mylonas, Costas S. Tsigenopoulos

  G3: Genes, Genomes, Genetics March 2016 6: 509-519; https://doi.org/10.1534/g3.115.023432
• Whole-Genome Sequencing of a Canine Family Trio Reveals a FAM83G Variant Associated with Hereditary Footpad Hyperkeratosis

  Shumaila Sayyab, Agnese Viluma, Kerstin Bergvall, Emma Brunberg, Vidhya Jagannathan, Tosso Leeb, Göran Andersson, Tomas F. Bergström

  G3: Genes, Genomes, Genetics March 2016 6: 521-527; https://doi.org/10.1534/g3.115.025643
• Performance of Seven Tree Breeding Strategies Under Conditions of Inbreeding Depression

  Harry X. Wu, Henrik R. Hallingbäck, Leopoldo Sánchez

  G3: Genes, Genomes, Genetics March 2016 6: 529-540; https://doi.org/10.1534/g3.115.025767
• Aberrant Activation of p38 MAP Kinase-Dependent Innate Immune Responses Is Toxic to Caenorhabditis elegans

  Hilary K. Cheesman, Rhonda L. Feinbaum, Jose Thekkiniath, Robert H. Dowen, Annie L. Conery, Read Pukkila-Worley

  G3: Genes, Genomes, Genetics March 2016 6: 541-549; https://doi.org/10.1534/g3.115.025650
• Isolation of a Hypomorphic skn-1 Allele That Does Not Require a Balancer for Maintenance

  Lanlan Tang, William Dodd, Keith Choe

  G3: Genes, Genomes, Genetics March 2016 6: 551-558; https://doi.org/10.1534/g3.115.023010
• Novel Heterotypic Rox Sites for Combinatorial Dre Recombination Strategies

  Katherine Chuang, Eileen Nguyen, Yuri Sergeev, Tudor C. Badea

  G3: Genes, Genomes, Genetics March 2016 6: 559-571; https://doi.org/10.1534/g3.115.025841
• A Novel Recombinant DNA System for High Efficiency Affinity Purification of Proteins in Saccharomyces cerevisiae

  Brian H. Carrick, Linxuan Hao, Philip J. Smaldino, David R. Engelke

  G3: Genes, Genomes, Genetics March 2016 6: 573-578; https://doi.org/10.1534/g3.115.025106
• Genetic Architecture of Conspicuous Red Ornaments in Female Threespine Stickleback

  Lengxob Yong, Catherine L. Peichel, Jeffrey S. McKinnon

  G3: Genes, Genomes, Genetics March 2016 6: 579-588; https://doi.org/10.1534/g3.115.024505
• FW: An R Package for Finlay–Wilkinson Regression that Incorporates Genomic/Pedigree Information and Covariance Structures Between Environments

  Lian Lian, Gustavo de los Campos

  G3: Genes, Genomes, Genetics March 2016 6: 589-597; https://doi.org/10.1534/g3.115.026328
• Genetic Correlates of Individual Differences in Sleep Behavior of Free-Living Great Tits (Parus major)

  Erica F. Stuber, Christine Baumgartner, Niels J. Dingemanse, Bart Kempenaers, Jakob C. Mueller

  G3: Genes, Genomes, Genetics March 2016 6: 599-607; https://doi.org/10.1534/g3.115.024216
• The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations

  Ana M. Poets, Mohsen Mohammadi, Kiran Seth, Hongyun Wang, Thomas J. Y. Kono, Zhou Fang, Gary J. Muehlbauer, Kevin P. Smith, Peter L. Morrell

  G3: Genes, Genomes, Genetics March 2016 6: 609-622; https://doi.org/10.1534/g3.115.024349
• Suppression of F1 Male-Specific Lethality in Caenorhabditis Hybrids by cbr-him-8

  Vaishnavi Ragavapuram, Emily Elaine Hill, Scott Everet Baird

  G3: Genes, Genomes, Genetics March 2016 6: 623-629; https://doi.org/10.1534/g3.115.025320
• Genome-Based Selection and Characterization of Fusarium circinatum-Specific Sequences

  Mkhululi N. Maphosa, Emma T. Steenkamp, Brenda D. Wingfield

  G3: Genes, Genomes, Genetics March 2016 6: 631-639; https://doi.org/10.1534/g3.115.025817
• Vesicular Trafficking Systems Impact TORC1-Controlled Transcriptional Programs in Saccharomyces cerevisiae

  Joanne M. Kingsbury, Maria E. Cardenas

  G3: Genes, Genomes, Genetics March 2016 6: 641-652; https://doi.org/10.1534/g3.115.023911
• Combinatorial Cis-regulation in Saccharomyces Species

  Aaron T. Spivak, Gary D. Stormo

  G3: Genes, Genomes, Genetics March 2016 6: 653-667; https://doi.org/10.1534/g3.115.024331
• A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae

  Daniel B. Chu, Sean M. Burgess

  G3: Genes, Genomes, Genetics March 2016 6: 669-682; https://doi.org/10.1534/g3.115.024380
• Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines

  Marcus Stoiber, Susan Celniker, Lucy Cherbas, Ben Brown, Peter Cherbas

  G3: Genes, Genomes, Genetics March 2016 6: 683-694; https://doi.org/10.1534/g3.115.023366
• Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution

  John W. Davey, Mathieu Chouteau, Sarah L. Barker, Luana Maroja, Simon W. Baxter, Fraser Simpson, Richard M. Merrill, Mathieu Joron, James Mallet, Kanchon K. Dasmahapatra, Chris D. Jiggins

  G3: Genes, Genomes, Genetics March 2016 6: 695-708; https://doi.org/10.1534/g3.115.023655
• The E2F-DP1 Transcription Factor Complex Regulates Centriole Duplication in Caenorhabditis elegans

  Jacqueline G. Miller, Yan Liu, Christopher W. Williams, Harold E. Smith, Kevin F. O’Connell

  G3: Genes, Genomes, Genetics March 2016 6: 709-720; https://doi.org/10.1534/g3.115.025577
• Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching

  Matthew B. Lohse, Alexander D. Johnson

  G3: Genes, Genomes, Genetics March 2016 6: 721-729; https://doi.org/10.1534/g3.115.024885
• Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

  C. Alisha Quandt, Yanming Di, Justin Elser, Pankaj Jaiswal, Joseph W. Spatafora

  G3: Genes, Genomes, Genetics March 2016 6: 731-741; https://doi.org/10.1534/g3.116.027045
• Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects

  Omnia Gamal El-Dien, Blaise Ratcliffe, Jaroslav Klápště, Ilga Porth, Charles Chen, Yousry A. El-Kassaby

  G3: Genes, Genomes, Genetics March 2016 6: 743-753; https://doi.org/10.1534/g3.115.025957
• Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing

  Yongjun Shu, Ying Liu, Wei Li, Lili Song, Jun Zhang, Changhong Guo

  G3: Genes, Genomes, Genetics March 2016 6: 755-765; https://doi.org/10.1534/g3.115.025981