October 2016 Table of Contents

Investigations

• A Drosophila LexA Enhancer-Trap Resource for Developmental Biology and Neuroendocrine Research

  Lutz Kockel, Lutfi M. Huq, Anika Ayyar, Emma Herold, Elle MacAlpine, Madeline Logan, Christina Savvides, Grace E. S. Kim, Jiapei Chen, Theresa Clark, Trang Duong, Vahid Fazel-Rezai, Deanna Havey, Samuel Han, Ravi Jagadeesan, Eun Soo Jackie Kim, Diane Lee, Kaelina Lombardo, Ida Piyale, Hansen Shi, Lydia Stahr, Dana Tung, Uriel Tayvah, Flora Wang, Ja-Hon Wang, Sarah Xiao, Sydni M. Topper, Sangbin Park, Cheryl Rotondo, Anne E. Rankin, Townley W. Chisholm, Seung K. Kim

  G3: Genes, Genomes, Genetics October 2016 6: 3017-3026; https://doi.org/10.1534/g3.116.031229
• Tandem Duplication Events in the Expansion of the Small Heat Shock Protein Gene Family in Solanum lycopersicum (cv. Heinz 1706)

  Flavia J. Krsticevic, Débora P. Arce, Joaquín Ezpeleta, Elizabeth Tapia

  G3: Genes, Genomes, Genetics October 2016 6: 3027-3034; https://doi.org/10.1534/g3.116.032045
• Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea

  Vairavan Lakshmanan, Dhiru Bansal, Jahnavi Kulkarni, Deepak Poduval, Srikar Krishna, Vidyanand Sasidharan, Praveen Anand, Aswin Seshasayee, Dasaradhi Palakodeti

  G3: Genes, Genomes, Genetics October 2016 6: 3035-3048; https://doi.org/10.1534/g3.116.031120
• Characterization of a Novel MMS-Sensitive Allele of Schizosaccharomyces pombe mcm4⁺

  Nimna S. Ranatunga, Susan L. Forsburg

  G3: Genes, Genomes, Genetics October 2016 6: 3049-3063; https://doi.org/10.1534/g3.116.033571
• The Evolution of the FT/TFL1 Genes in Amaranthaceae and Their Expression Patterns in the Course of Vegetative Growth and Flowering in Chenopodium rubrum

  Jana Drabešová, Lucie Černá, Helena Mašterová, Pavla Koloušková, Martin Potocký, Helena Štorchová

  G3: Genes, Genomes, Genetics October 2016 6: 3065-3076; https://doi.org/10.1534/g3.116.028639
• Php4 Is a Key Player for Iron Economy in Meiotic and Sporulating Cells

  Ariane Brault, Charalampos Rallis, Vincent Normant, Jean-Michel Garant, Jürg Bähler, Simon Labbé

  G3: Genes, Genomes, Genetics October 2016 6: 3077-3095; https://doi.org/10.1534/g3.116.031898
• Genome Evolution in Three Species of Cactophilic Drosophila

  Alejandro Sanchez-Flores, Fernando Peñaloza, Javier Carpinteyro-Ponce, Nestor Nazario-Yepiz, Cei Abreu-Goodger, Carlos A. Machado, Therese Ann Markow

  G3: Genes, Genomes, Genetics October 2016 6: 3097-3105; https://doi.org/10.1534/g3.116.033779
• Cross-Validation Without Doing Cross-Validation in Genome-Enabled Prediction

  Daniel Gianola, Chris-Carolin Schön

  G3: Genes, Genomes, Genetics October 2016 6: 3107-3128; https://doi.org/10.1534/g3.116.033381
• Cryptic Genetic Variation for Arabidopsis thaliana Seed Germination Speed in a Novel Salt Stress Environment

  Wei Yuan, Jonathan M. Flowers, Dustin J. Sahraie, Michael D. Purugganan

  G3: Genes, Genomes, Genetics October 2016 6: 3129-3138; https://doi.org/10.1534/g3.116.033944
• Interallelic Transcriptional Enhancement as an in Vivo Measure of Transvection in Drosophila melanogaster

  Geoffrey P. Noble, Patrick J. Dolph, Surachai Supattapone

  G3: Genes, Genomes, Genetics October 2016 6: 3139-3148; https://doi.org/10.1534/g3.116.032300
• Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans

  Mary L. Ladage, Skylar D. King, David J. Burks, Daniel L. Quan, Anastacia M. Garcia, Rajeev K. Azad, Pamela A. Padilla

  G3: Genes, Genomes, Genetics October 2016 6: 3149-3160; https://doi.org/10.1534/g3.116.031583
• Efficient CRISPR-Mediated Post-Transcriptional Gene Silencing in a Hyperthermophilic Archaeon Using Multiplexed crRNA Expression

  Ziga Zebec, Isabelle Anna Zink, Melina Kerou, Christa Schleper

  G3: Genes, Genomes, Genetics October 2016 6: 3161-3168; https://doi.org/10.1534/g3.116.032482
• A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification

  Daniel Fulop, Aashish Ranjan, Itai Ofner, Michael F. Covington, Daniel H. Chitwood, Donelly West, Yasunori Ichihashi, Lauren Headland, Daniel Zamir, Julin N. Maloof, Neelima R. Sinha

  G3: Genes, Genomes, Genetics October 2016 6: 3169-3184; https://doi.org/10.1534/g3.116.030536
• An Eye on Trafficking Genes: Identification of Four Eye Color Mutations in Drosophila

  Paaqua Grant, Tara Maga, Anna Loshakov, Rishi Singhal, Aminah Wali, Jennifer Nwankwo, Kaitlin Baron, Diana Johnson

  G3: Genes, Genomes, Genetics October 2016 6: 3185-3196; https://doi.org/10.1534/g3.116.032508
• Rapid Screening for CRISPR-Directed Editing of the Drosophila Genome Using white Coconversion

  Daniel Tianfang Ge, Cindy Tipping, Michael H. Brodsky, Phillip D. Zamore

  G3: Genes, Genomes, Genetics October 2016 6: 3197-3206; https://doi.org/10.1534/g3.116.032557
• Whole-Genome Sequencing and iPLEX MassARRAY Genotyping Map an EMS-Induced Mutation Affecting Cell Competition in Drosophila melanogaster

  Chang-Hyun Lee, Gerard Rimesso, David M. Reynolds, Jinlu Cai, Nicholas E. Baker

  G3: Genes, Genomes, Genetics October 2016 6: 3207-3217; https://doi.org/10.1534/g3.116.029421
• The Genetic Architecture of Noise-Induced Hearing Loss: Evidence for a Gene-by-Environment Interaction

  Joel Lavinsky, Marshall Ge, Amanda L. Crow, Calvin Pan, Juemei Wang, Pezhman Salehi, Anthony Myint, Eleazar Eskin, Hooman Allayee, Aldons J. Lusis, Rick A. Friedman

  G3: Genes, Genomes, Genetics October 2016 6: 3219-3228; https://doi.org/10.1534/g3.116.032516
• Ctr9, a Key Component of the Paf1 Complex, Affects Proliferation and Terminal Differentiation in the Developing Drosophila Nervous System

  Shahrzad Bahrampour, Stefan Thor

  G3: Genes, Genomes, Genetics October 2016 6: 3229-3239; https://doi.org/10.1534/g3.116.034231
• Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis

  Daniel Gianola, Maria I. Fariello, Hugo Naya, Chris-Carolin Schön

  G3: Genes, Genomes, Genetics October 2016 6: 3241-3256; https://doi.org/10.1534/g3.116.034256
• Regulation of the MEI-1/MEI-2 Microtubule-Severing Katanin Complex in Early Caenorhabditis elegans Development

  Sarah M. Beard, Ryan B. Smit, Benjamin G. Chan, Paul. E. Mains

  G3: Genes, Genomes, Genetics October 2016 6: 3257-3268; https://doi.org/10.1534/g3.116.031666
• Characterization of the Far Transcription Factor Family in Aspergillus flavus

  Xingyu Luo, Katharyn J. Affeldt, Nancy P. Keller

  G3: Genes, Genomes, Genetics October 2016 6: 3269-3281; https://doi.org/10.1534/g3.116.032466
• Head Transcriptomes of Two Closely Related Species of Fruit Flies of the Anastrepha fraterculus Group Reveals Divergent Genes in Species with Extensive Gene Flow

  Victor Borges Rezende, Carlos Congrains, André Luís A. Lima, Emeline Boni Campanini, Aline Minali Nakamura, Janaína Lima de Oliveira, Samira Chahad-Ehlers, Iderval Sobrinho Junior, Reinaldo Alves de Brito

  G3: Genes, Genomes, Genetics October 2016 6: 3283-3295; https://doi.org/10.1534/g3.116.030486
• Sporadic Gene Loss After Duplication Is Associated with Functional Divergence of Sirtuin Deacetylases Among Candida Yeast Species

  Christopher B. Rupert, Justin M. H. Heltzel, Derek J. Taylor, Laura N. Rusche

  G3: Genes, Genomes, Genetics October 2016 6: 3297-3305; https://doi.org/10.1534/g3.116.033845
• Mutations in the Motile Cilia Gene DNAAF1 Are Associated with Neural Tube Defects in Humans

  Chunyue Miao, Qian Jiang, Huili Li, Qin Zhang, Baoling Bai, Yihua Bao, Ting Zhang

  G3: Genes, Genomes, Genetics October 2016 6: 3307-3316; https://doi.org/10.1534/g3.116.033696
• Global Fitness Profiling Identifies Arsenic and Cadmium Tolerance Mechanisms in Fission Yeast

  Lan Guo, Abantika Ganguly, Lingling Sun, Fang Suo, Li-Lin Du, Paul Russell

  G3: Genes, Genomes, Genetics October 2016 6: 3317-3333; https://doi.org/10.1534/g3.116.033829
• Obp56h Modulates Mating Behavior in Drosophila melanogaster

  John R. Shorter, Lauren M. Dembeck, Logan J. Everett, Tatiana V. Morozova, Gunjan H. Arya, Lavanya Turlapati, Genevieve E. St. Armour, Coby Schal, Trudy F. C. Mackay, Robert R. H. Anholt

  G3: Genes, Genomes, Genetics October 2016 6: 3335-3342; https://doi.org/10.1534/g3.116.034595
• Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae)

  Shamayim T. Ramírez-Puebla, Ernesto Ormeño-Orrillo, Arturo Vera-Ponce de León, Luis Lozano, Alejandro Sanchez-Flores, Mónica Rosenblueth, Esperanza Martínez-Romero

  G3: Genes, Genomes, Genetics October 2016 6: 3343-3349; https://doi.org/10.1534/g3.116.031237
• Evaluation of Ligand-Inducible Expression Systems for Conditional Neuronal Manipulations of Sleep in Drosophila

  Qiuling Li, Nicholas Stavropoulos

  G3: Genes, Genomes, Genetics October 2016 6: 3351-3359; https://doi.org/10.1534/g3.116.034132
• Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans

  Veronica Codoni, Yuna Blum, Mete Civelek, Carole Proust, Oscar Franzén, Cardiogenics Consortium, IDEM Leducq Consortium CADGenomics, Johan L. M. Björkegren, Wilfried Le Goff, Francois Cambien, Aldons J. Lusis, David-Alexandre Trégouët

  G3: Genes, Genomes, Genetics October 2016 6: 3361-3371; https://doi.org/10.1534/g3.116.033894
• Main Effect QTL with Dominance Determines Heterosis for Dynamic Plant Height in Upland Cotton

  Lianguang Shang, Lingling Ma, Yumei Wang, Ying Su, Xiaocui Wang, Yuhua Li, Abdugheni Abduweli, Shihu Cai, Fang Liu, Kunbo Wang, Jinping Hua

  G3: Genes, Genomes, Genetics October 2016 6: 3373-3379; https://doi.org/10.1534/g3.116.034355
• Seizure Suppression by High Temperature via cAMP Modulation in Drosophila

  Arunesh Saras, Mark A. Tanouye

  G3: Genes, Genomes, Genetics October 2016 6: 3381-3387; https://doi.org/10.1534/g3.116.034629
• A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish

  Xin Geng, Shikai Liu, Jun Yao, Lisui Bao, Jiaren Zhang, Chao Li, Ruijia Wang, Jin Sha, Peng Zeng, Degui Zhi, Zhanjiang Liu

  G3: Genes, Genomes, Genetics October 2016 6: 3389-3398; https://doi.org/10.1534/g3.116.032201