April 2015 Table of Contents

Investigations

• A Bayesian Model for the Analysis of Transgenerational Epigenetic Variation

  Luis Varona, Sebastián Munilla, Elena Flavia Mouresan, Aldemar González-Rodríguez, Carlos Moreno, Juan Altarriba

  G3: Genes, Genomes, Genetics April 2015 5: 477-485; https://doi.org/10.1534/g3.115.016725
• Identification of eQTLs for Hepatic Xbp1s and Socs3 Gene Expression in Mice Fed a High-Fat, High-Caloric Diet

  Sarina Pasricha, Jane Kenney-Hunt, Kristy Anderson, Nadereh Jafari, Rabea A. Hall, Frank Lammert, James Cheverud, Richard M. Green

  G3: Genes, Genomes, Genetics April 2015 5: 487-496; https://doi.org/10.1534/g3.115.016626
• The Transcriptional Stress Response of Candida albicans to Weak Organic Acids

  Fabien Cottier, Alrina Shin Min Tan, Jinmiao Chen, Josephine Lum, Francesca Zolezzi, Michael Poidinger, Norman Pavelka

  G3: Genes, Genomes, Genetics April 2015 5: 497-505; https://doi.org/10.1534/g3.114.015941
• The Phage Mu Middle Promoter P_m Contains a Partial UP Element

  Ji Ma, Martha M. Howe

  G3: Genes, Genomes, Genetics April 2015 5: 507-516; https://doi.org/10.1534/g3.114.013607
• Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation

  Pierre-François Roux, Simon Boitard, Yuna Blum, Brian Parks, Alexandra Montagner, Etienne Mouisel, Anis Djari, Diane Esquerré, Colette Désert, Morgane Boutin, Sophie Leroux, Frédéric Lecerf, Elisabeth Le Bihan-Duval, Christophe Klopp, Bertrand Servin, Frédérique Pitel, Michel Jean Duclos, Hervé Guillou, Aldons J. Lusis, Olivier Demeure, Sandrine Lagarrigue

  G3: Genes, Genomes, Genetics April 2015 5: 517-529; https://doi.org/10.1534/g3.115.016865
• Heritable Variation in Courtship Patterns in Drosophila melanogaster

  Bryn E. Gaertner, Elizabeth A. Ruedi, Lenovia J. McCoy, Jamie M. Moore, Mariana F. Wolfner, Trudy F. C. Mackay

  G3: Genes, Genomes, Genetics April 2015 5: 531-539; https://doi.org/10.1534/g3.114.014811
• Selection for Silage Yield and Composition Did Not Affect Genomic Diversity Within the Wisconsin Quality Synthetic Maize Population

  Aaron J. Lorenz, Timothy M. Beissinger, Renato Rodrigues Silva, Natalia de Leon

  G3: Genes, Genomes, Genetics April 2015 5: 541-549; https://doi.org/10.1534/g3.114.015263
• Comparison of Larval and Adult Drosophila Astrocytes Reveals Stage-Specific Gene Expression Profiles

  Yanmei Huang, Fanny S. Ng, F. Rob Jackson

  G3: Genes, Genomes, Genetics April 2015 5: 551-558; https://doi.org/10.1534/g3.114.016162
• Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing Analysis

  Nur Fatihah Mohd-Yusoff, Pradeep Ruperao, Nurain Emylia Tomoyoshi, David Edwards, Peter M. Gresshoff, Bandana Biswas, Jacqueline Batley

  G3: Genes, Genomes, Genetics April 2015 5: 559-567; https://doi.org/10.1534/g3.114.014571
• Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

  Marco Lopez-Cruz, Jose Crossa, David Bonnett, Susanne Dreisigacker, Jesse Poland, Jean-Luc Jannink, Ravi P. Singh, Enrique Autrique, Gustavo de los Campos

  G3: Genes, Genomes, Genetics April 2015 5: 569-582; https://doi.org/10.1534/g3.114.016097
• Adaptive Evolution of Genes Involved in the Regulation of Germline Stem Cells in Drosophila melanogaster and D. simulans

  Heather A. Flores, Vanessa L. Bauer DuMont, Aalya Fatoo, Diana Hubbard, Mohammed Hijji, Daniel A. Barbash, Charles F. Aquadro

  G3: Genes, Genomes, Genetics April 2015 5: 583-592; https://doi.org/10.1534/g3.114.015875
• Global Diversity Lines–A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains

  Jennifer K. Grenier, J. Roman Arguello, Margarida Cardoso Moreira, Srikanth Gottipati, Jaaved Mohammed, Sean R. Hackett, Rachel Boughton, Anthony J. Greenberg, Andrew G. Clark

  G3: Genes, Genomes, Genetics April 2015 5: 593-603; https://doi.org/10.1534/g3.114.015883
• Gene Regulation by H-NS as a Function of Growth Conditions Depends on Chromosomal Position in Escherichia coli

  Elisa Brambilla, Bianca Sclavi

  G3: Genes, Genomes, Genetics April 2015 5: 605-614; https://doi.org/10.1534/g3.114.016139
• Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix

  Zhe Zhang, Malena Erbe, Jinlong He, Ulrike Ober, Ning Gao, Hao Zhang, Henner Simianer, Jiaqi Li

  G3: Genes, Genomes, Genetics April 2015 5: 615-627; https://doi.org/10.1534/g3.114.016261
• Rock, Paper, Scissors: Harnessing Complementarity in Ortholog Detection Methods Improves Comparative Genomic Inference

  M. Cyrus Maher, Ryan D. Hernandez

  G3: Genes, Genomes, Genetics April 2015 5: 629-638; https://doi.org/10.1534/g3.115.017095
• Conserved RNA-Binding Proteins Required for Dendrite Morphogenesis in Caenorhabditis elegans Sensory Neurons

  Simona Antonacci, Daniel Forand, Margaret Wolf, Courtney Tyus, Julia Barney, Leah Kellogg, Margo A. Simon, Genevieve Kerr, Kristen L. Wells, Serena Younes, Nathan T. Mortimer, Eugenia C. Olesnicky, Darrell J. Killian

  G3: Genes, Genomes, Genetics April 2015 5: 639-653; https://doi.org/10.1534/g3.115.017327
• RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK

  Ryan F. McCormick, Sandra K. Truong, John E. Mullet

  G3: Genes, Genomes, Genetics April 2015 5: 655-665; https://doi.org/10.1534/g3.115.017012
• Drosophila melanogaster Activating Transcription Factor 4 Regulates Glycolysis During Endoplasmic Reticulum Stress

  Ji Eun Lee, McKenna Oney, Kimberly Frizzell, Nitin Phadnis, Julie Hollien

  G3: Genes, Genomes, Genetics April 2015 5: 667-675; https://doi.org/10.1534/g3.115.017269