Supporting Information for Chiu et al., 2013

Files in this Data Supplement:

• Supporting Information - Figures S1-S4 and Tables S1-S14 (PDF, 1 MB)
• Figure S1 - 17-kmer estimation of genome size. (PDF, 412 KB)
• Figure S2 - Synteny map between D. suzukii and D. melanogaster genomes. (PDF, 510 KB)
• Figure S3 - Best-scoring maximum likelihood (ML) tree of 15 Drosophila species with outgroup A. gambiae (not shown) using 5,322 gene partitions with 5,199,249 sites. (PDF, 476 KB)
• Figure S4 - (A) GC₃ content for D. suzukii X and autosomal positions. (B) GC₃ content for Drosophila suzukii male biased genes (left) and the overall D. suzukii GC₃ content. (PDF, 447 KB)
• Table S1 - Data production for Drosophila suzukii genome sequencing. (PDF, 516 KB)
• Table S2 - Drosophila suzukii 17-k-mer statistics. (PDF, 516 KB)
• Table S3 - Statistics of the assembled genome. (PDF, 408 KB)
• Table S4 - A list of 25 genes in Drosophila suzukii with the highest non-synonymous (dN) substitution rates. (PDF, 522 KB)
• Table S5 - A list of Drosophila suzukii genes with sex-biased expression pattern. (PDF, 756 KB)
• Table S6 - A list of genes showing sex-biased shift in expression between Drosophila suzukii and Drosophila melanogaster. (PDF, 527 KB)
• Table S7 - GO term and functional classification enrichment analysis using DAVID for gene families that are expanded in the Drosophila suzukii genome as compared to 14 Drosophila species analyzed in this study. (PDF, 536 KB)
• Table S8 - GO term and functional classification enrichment analysis using DAVID for gene families that are expanded in the Drosophila suzukii genome as compared to the basal paraphyletic group of Drosophilidae including D. ananassae, D. persimilis, D. pseudoobscura, D. willistoni, D. grimshawi, D. mojavensis, and D. virulis. (PDF, 542 KB)
• Table S9 - GO term and functional classification enrichment analysis using DAVID for gene families that are expanded in the Drosophila suzukii genome as compared to species in the melanogaster subgroup, including D. simulans, D. sechellia, D. yakuba, D. erecta, and D. melanogaster. (PDF, 532 KB)
• Table S10 - GO term and functional classification enrichment analysis using DAVID for gene families that are contracted in the Drosophila suzukii genome as compared to 14 Drosophila species analyzed in this study. (PDF, 542 KB)
• Table S11 - GO term and functional classification enrichment analysis using DAVID for gene families that are contracted in the Drosophila suzukii genome as compared to the basal paraphyletic group of Drosophilidae including D. ananassae, D. persimilis, D. pseudoobscura, D. willistoni, D. grimshawi, D. mojavensis, and D. virulis. (PDF, 538 KB)
• Table S12 - GO term and functional classification enrichment analysis using DAVID for gene families that are contracted in the Drosophila suzukii genome as compared to species in the melanogaster subgroup, including D. simulans, D. sechellia, D. yakuba, D. erecta, and D. melanogaster. (PDF, 544 KB)
• Table S13 - Gene families of enzymes involved in metabolism and transport of xenobiotics. (PDF, 411 KB)
• Table S14 - Total base pairs of transposable element families. (PDF, 439 KB)