Table 2 Varscan SNP data summary for ten and vns (coverage > 8)
SNPsten (ROI = 0–20Mbp)vns (ROI = 40–70Mbp)
Genome-Wide
 Total SNPs (genome wide)36,186,87336,790,695
 Homozygous EMS SNPs after filtering1487,899
Region of Interest (ROI)
 Total SNPs266,837470,763
 Homozygous EMS SNPs after filtering50427
 High effect homozygous EMS SNPs01
 Moderate effect homozygous EMS SNPs42