Table 2 Estimation of synonymous (ds) and nonsynonymous (dn) substitution rate for the paralogous MATE genes in cotton
Paralogous Gene PairsSDSnSNpspndsdnds/dnps/pnPurifying Selection
GaMATE9GaMATE27218.1667817.8333322.51090.50.67650.751.74197.41360.2350.902Yes
GrMATE3GrMATE17112.3333394.6667163.6667526.33330.68640.74981.85016.34740.29150.9153Yes
GaMATE20GaMATE35265.8333907.1667380.16671209.8330.69930.74982.01996.28440.32140.9326Yes
GaMATE29GaMATE63212.3333689.6667298.3333919.66670.71170.74992.23166.76590.32980.9491Yes
GrMATE46GrMATE48278.8333918.1667389.66671224.3330.71560.74992.31086.98050.3310.9542Yes
GaMATE37GrMATE3112.3333391.6667167.1667522.83330.6720.74911.69745.06380.33520.897Yes
GaMATE67GrMATE5238.8333841.1667333.33331121.6670.71650.74992.33146.91480.33720.9554Yes
GrMATE21GrMATE40243.3333839.6667344.16671119.8330.7070.74982.14456.22640.34440.9429Yes
GrMATE8GrMATE44233.3333834.6667354.51115.50.65820.74821.57544.5430.34680.8797Yes
GaMATE44GaMATE64223.5768.5313.16671024.8330.71370.74992.27076.5430.3470.9517Yes
GrMATE34GrMATE64268.6667870.3333369.51160.50.72710.752.6177.46020.35080.9695Yes
GaMATE28GrMATE44221.8333795.1667324.66671061.3330.68330.74921.81455.14640.35260.912Yes
GrMATE44GrMATE50224.1667793.8333326.51059.50.68660.74931.85275.18360.35740.9163Yes
GaMATE62GaMATE63260.3333865.6667372.16671154.8330.69950.74962.02375.65810.35770.9332Yes
GaMATE27GrMATE52234.3333796.6667340.66671063.3330.68790.74921.86815.14790.36290.9181Yes
GaMATE45GrMATE8236.1667834.8333354.16671115.8330.66680.74821.64934.51190.36550.8913Yes
GrMATE12GrMATE53241.5807.533910770.71240.74982.24466.06040.37040.9501Yes
GaMATE7GrMATE54215.8333806.1667330.66671079.3330.65270.74691.53194.11930.37190.8739Yes
GaMATE63GrMATE29213748324.83331001.1670.65570.74711.55544.17390.37260.8777Yes
GaMATE24GaMATE66244.1667849.8333350.83331134.1670.6960.74931.97285.23470.37690.9288Yes
GaMATE21GaMATE42222.1667764.8333314.66671020.3330.7060.74962.12765.63680.37740.9419Yes
GaMATE26GrMATE46280.3333917.6667390.16671223.8330.71850.74982.37756.2930.37780.9582Yes
GrMATE26GrMATE63247.6667797.3333337.83331063.1670.73310.752.84477.39450.38470.9775Yes
GaMATE16GaMATE63251.3333829.6667348.51106.50.72120.74982.44446.21740.39320.9618Yes
GrMATE29GrMATE43217.1667756.8333315.16671010.8330.68910.74871.88264.78120.39370.9203Yes
GaMATE23GaMATE43233.3333814.6667323.51086.50.72130.74982.44686.20370.39440.9619Yes
GaMATE14GrMATE62224810330.16671082.8330.67840.7481.76224.45940.39520.907Yes
GaMATE8GrMATE52231.1667764.8333331.83331021.1670.69660.7491.98224.95010.40040.9301Yes
GaMATE22GaMATE35231.6667806.3333330.51076.50.7010.7492.04554.98970.410.9358Yes
GaMATE35GrMATE34267.8333907.1667379.16671210.8330.70640.74922.13335.14050.4150.9428Yes
GaMATE49GaMATE63243.6667816.333335210910.69220.74821.92284.54240.42330.9251Yes
GaMATE57GrMATE27254.8333863.1667357.16671151.8330.71350.74942.26685.32970.42530.9521Yes
GaMATE33GaMATE66249.3333843.6667344.66671125.3330.72340.74972.50455.87760.42610.9649Yes
GrMATE16GrMATE44254.1667872.833336411660.69830.74862.00544.69710.42690.9328Yes
GrMATE24GrMATE29215.1667756.8333313.66671012.3330.6860.74761.84564.31250.4280.9176Yes
GaMATE64GrMATE35262.5901.5366.16671202.8330.71690.74952.34015.45610.42890.9565Yes
GaMATE40GrMATE29216.8333758.1667312.66671013.3330.69350.74821.93934.52040.4290.9269Yes
GaMATE46GaMATE57256.6667863.3333357.16671151.8330.71860.74952.38045.53090.43040.9588Yes
GaMATE48GrMATE2571267104.5357.50.67940.74691.77264.10530.43180.9097Yes
GrMATE30GrMATE58273.1667919.8333383.33331227.6670.71260.74932.2495.18410.43380.9511Yes
GaMATE36GaMATE56224.1667739.8333319.6667988.33330.70130.74862.054.6950.43660.9368Yes
GaMATE3GaMATE63243.1667818.8333343.66671093.3330.70760.74892.15414.91640.43810.9448Yes
GrMATE11GrMATE25238.3333831.666735011140.6810.74661.7894.03820.4430.9121Yes
GaMATE68GrMATE19241850340.83331135.1670.70710.74882.14574.82130.44510.9443Yes
GrMATE42GrMATE68223.1667774.8333315.16671034.8330.70810.74882.16344.79880.45080.9457Yes
GrMATE60GrMATE61260.6667892.3333375.33331193.6670.69450.74761.95274.2950.45460.929Yes
GrMATE15GrMATE33146.8333538.16672087190.70590.74852.12574.65760.45640.9431Yes
GrMATE17GrMATE58258.1667871.8333367.66671165.3330.70220.74812.06444.49990.45880.9386Yes
GaMATE15GrMATE58258.6667871.3333368.33331164.6670.70230.74812.06584.49950.45910.9387Yes
GrMATE33GrMATE41216.8333791.166731910610.67970.74571.77583.86760.45910.9116Yes
GaMATE43GrMATE6229811325.83331084.1670.70280.7482.07454.46030.46510.9395Yes
GrMATE7GrMATE53243.3333808.6667336.83331079.1670.72240.74932.47715.28080.46910.9641Yes
GrMATE22GrMATE40238.1667836.8333343.51120.50.69340.74681.93744.10190.47230.9284Yes
GaMATE17GrMATE50235794326.16671059.8330.72050.74922.42655.10880.4750.9617Yes
GaMATE10GaMATE53225.5829.532811120.68750.7461.86373.91660.47580.9216Yes
GaMATE2GrMATE14251.8333853.1667349.16671138.8330.72120.74922.44585.09450.48010.9627Yes
GrMATE13GrMATE33270.8333941.1667380.51257.50.71180.74842.23264.63280.48190.951Yes
GaMATE56GrMATE8244.3333828.6667357.66671112.3330.68310.7451.8133.75510.48280.917Yes
GaMATE31GrMATE44251.5870.5363.33331166.6670.69220.74611.92233.95260.48630.9277Yes
GrMATE39GrMATE58236856342.83331148.1670.68840.74551.87433.84310.48770.9233Yes
GaMATE61GrMATE16247.8333846.1667348.16671130.8330.71180.74832.23344.55320.49050.9513Yes
GrMATE48GrMATE60281895381.33331193.6670.73690.74983.03496.13750.49450.9828Yes
GaMATE12GaMATE56244859349.33331150.6670.69850.74652.00854.03060.49830.9356Yes
GaMATE34GrMATE59228.5845.533411360.68410.74431.82433.65680.49890.9192Yes
GaMATE53GrMATE39231.8333856.1667339.66671151.3330.68250.74361.80633.57640.50510.9178Yes
GrMATE23GrMATE35233.1667809.8333331.66671084.3330.7030.74682.07774.10430.50620.9413Yes
GaMATE5GrMATE49244.8333850.1667340.33331135.6670.71940.74862.39914.71580.50870.961Yes
>GaMATE1GrMATE11231.5762.5326.83331020.1670.70830.74742.16744.25620.50920.9477Yes
GrMATE6GrMATE70243829342.83331109.1670.70880.74742.17624.25070.5120.9483Yes
GrMATE64GrMATE65265.3333861.6667376.33331153.6670.7050.74692.11094.1150.5130.944Yes
GaMATE66GrMATE51235.3333810.6667335.66671086.3330.70110.74622.04763.9720.51550.9395Yes
GaMATE11GaMATE37242.8333812.1667339.33331085.6670.71560.74812.31194.47620.51650.9566Yes
GaMATE52GrMATE50233.6667795.3333323.66671062.3330.72190.74872.46424.74920.51890.9643Yes
GaMATE65GrMATE3103.3333386.6667161.3333528.66670.64050.73141.44312.77270.52050.8757Yes
GaMATE58GrMATE38235.8333849.1667337.16671138.8330.69950.74562.02293.86180.52380.9381Yes
GrMATE5GrMATE29207745314.33331011.6670.65850.73641.57813.0080.52460.8943Yes
GaMATE38GrMATE14174.6667587.3333241.5784.50.72330.74872.50044.75240.52610.9661Yes
GaMATE59GrMATE48284.3333894.666738211930.74430.74993.66346.96110.52630.9925Yes
GrMATE41GrMATE51217.1667779.8333324.66671055.3330.66890.73891.66823.16290.52740.9052Yes
GaMATE50GaMATE51254.8333836.1667350.33331116.6670.72740.74882.62674.83210.54360.9714Yes
GrMATE56GrMATE651334461845960.72280.74832.48844.57690.54370.9659Yes
GrMATE19GrMATE46257.8333864.1667361.33331156.6670.71360.74712.26834.17120.54380.9551Yes
GrMATE1GrMATE67237.6667815.3333341.16671095.8330.69660.7441.98213.6250.54680.9363Yes
GaMATE19GrMATE17263.5841.535911230.7340.74932.88485.26780.54760.9795Yes
GrMATE2GrMATE51245.5811.533810840.72630.74862.59194.72140.5490.9702Yes
GrMATE43GrMATE64256.5870.5362.83331167.1670.70690.74582.1433.89290.55050.9479Yes
GrMATE45GrMATE48249.6667810.333334510830.72370.74822.51214.53690.55370.9672Yes
GrMATE20GrMATE27270.6667927.3333372.16671238.8330.72730.74862.62244.68830.55930.9716Yes
GaMATE30GrMATE60274899374.66671200.3330.73130.7492.76934.93460.56120.9764Yes
GaMATE32GrMATE42263856364.33331144.6670.72190.74782.46234.37920.56230.9653Yes
GrMATE32GrMATE67234.3333798.666733210720.70580.7452.12393.76170.56460.9474Yes
GaMATE4GaMATE45230.1667808.8333338.83331095.1670.67930.73851.77113.13640.56470.9198Yes
GrMATE38GrMATE4022083532811360.67070.7351.68542.93580.57410.9125Yes
GaMATE6GrMATE21253.1667838.8333348.66671121.3330.72610.74812.58464.47110.57810.9706Yes
GaMATE47GrMATE44231.3333747.6667313.3333997.66670.73830.74943.12025.36760.58130.9852Yes
GrMATE14GrMATE27239.6667844.3333347.33331140.6670.690.74021.89453.25410.58220.9322Yes
GrMATE52GrMATE59231.5788.5337.16671066.8330.68660.73911.8533.17370.58390.929Yes
GaMATE60GrMATE3109.8333388.1667162.3333527.66670.67660.73561.7432.96610.58760.9197Yes
GrMATE9GrMATE14251.1667852.833334711410.72380.74742.51644.26120.59050.9684Yes
GaMATE13GrMATE35246.3333841.6667344.51128.50.7150.74582.29953.89370.59060.9587Yes
GaMATE25GrMATE20268.1667890.8333366.83331190.1670.7310.74852.7584.65830.59210.9767Yes
GaMATE42GaMATE44227.6667756.3333321.66671016.3330.70780.74422.15773.64390.59220.9511Yes
GrMATE25GrMATE66252.1667841.8333338.33331122.6670.74530.74993.80766.39570.59530.994Yes
GaMATE39GrMATE44255.1667884.8333357.66671187.3330.71340.74522.26543.79290.59730.9573Yes
GaMATE18GrMATE63243.5790.5340.16671060.8330.71580.74522.31643.78370.61220.9606Yes
GaMATE51GrMATE65271.8333885.1667376.83331186.1670.72140.74622.4493.9720.61660.9667Yes
GrMATE47GrMATE54243.1667806.8333337.51081.50.72050.7462.42663.93130.61730.9658Yes
GrMATE61GrMATE66235.6667827.3333340.33331120.6670.69250.73831.92573.11720.61780.938Yes
GrMATE35GrMATE36244.6667839.3333344.16671128.8330.71090.74352.21543.56590.62130.9561Yes
GrMATE27GrMATE50222778325.51060.50.6820.73361.80072.86780.62790.9297Yes
GrMATE51GrMATE70242.6667807.3333337.83331084.1670.71830.74472.37293.70830.63990.9646Yes
GrMATE67GrMATE69223.1667805.8333331.16671105.8330.67390.72871.71582.67140.64230.9248Yes
GrMATE66GrMATE67224.1667806.833333011070.67930.72881.77112.67620.66180.932Yes
GaMATE54GaMATE60235.6667761.3333323.83331020.1670.72770.74632.6383.98040.66270.9752Yes
GrMATE63GrMATE67233.8333790.1667331.83331069.1670.70470.7392.10463.170.66390.9535Yes
GaMATE41GaMATE49245.3333811.6667346.51096.50.7080.74022.16243.25590.66410.9565Yes
GrMATE57GrMATE63245.6667790.3333339.16671061.8330.72430.74432.53093.6610.69130.9731Yes
GrMATE65GrMATE66241817346.51114.50.69550.73311.96682.8430.69180.9488Yes
GrMATE49GrMATE50232.3333790.6667322.16671063.8330.72120.74322.44373.530.69230.9703Yes
GrMATE37GrMATE57233795329.51077.50.70710.73782.14653.09010.69460.9584Yes
GrMATE58GrMATE60280.1667895.8333378.33331196.6670.74050.74863.27894.71660.69520.9892Yes
GrMATE36GrMATE41216.3333766.6667319.33331060.6670.67750.72281.75192.48810.70410.9372Yes
GrMATE50GrMATE65229.1667766.8333332.51053.50.68920.72791.88462.64310.71310.9469Yes
GrMATE40GrMATE50218.6667769.3333321.66671064.3330.67980.72281.77652.48850.71390.9405Yes
GrMATE59GrMATE70239.6667819.333334211190.70080.73222.04282.80570.72810.9571Yes
GrMATE68GrMATE69208.1667745.8333309.51040.50.67260.71681.70322.33820.72840.9383Yes
GaMATE55GaMATE66239.8333829.1667342.51133.50.70020.73152.03472.77710.73270.9573Yes
GrMATE62GrMATE68214.1667754.8333309.83331040.1670.69120.72571.90992.57170.74260.9525Yes
GrMATE4GrMATE13252.6667826.3333341.16671104.8330.74060.74793.28424.41790.74340.9902Yes
GrMATE10GrMATE67238.1667802.833333910980.70260.73122.07042.76380.74910.9609Yes
GrMATE54GrMATE57233.3333780.666733410730.69860.72762.01042.63180.76390.9602Yes
GrMATE18GrMATE45254.6667813.3333341.83331086.1670.7450.74883.75834.83510.77730.9949Yes
GrMATE55GrMATE57232.3333774.6667335.16671071.8330.69320.72271.93522.48620.77840.9591Yes
GrMATE31GrMATE63244.1667773.8333342.83331058.1670.71220.73132.24092.76850.80940.9739Yes
GrMATE53GrMATE57237.5777.5335.51071.50.70790.72562.162.56970.84060.9756Yes
GrMATE28GrMATE47250823347.16671128.8330.72010.72912.4172.68420.90050.9877Yes
GrMATE69GrMATE70247.5813.534111200.72580.72632.57552.59220.99360.9993Yes
  • Sn, The number of observed non-synonymous substitutions; s, number of synonymous sites; n, number of nonsynonymous sites; S, number of synonymous substitutions; N, number of nonsynonymous substitutions; ps, probability of rejecting the null hypothesis; pn, the proportion of observed non-synonymous substitutions; ds, synonymous substitution rate; dn, nonsynonymous substitution; ds/dn, selective strength of sequence; ps/pn, the ratio of observed synonymous substitution to the proportion of observed non-synonymous substitutions.