Table 4 Summary of conserved gene families under positive selection
Gene Family AnnotationAlignment LengthGene Ontology (Molecular Function)
formyltetrahydrofolate deformylase mitochondrial isoform x11053formyltetrahydrofolate deformylase activity; amino acid binding; hydroxymethyl-, formyl- and related transferase activity;
f-box kelch-repeat protein skip6-like1122protein degradation tagging activity
low quality protein: nitrate reductase2778oxidoreductase activity; metal ion binding; organic cyclic compound binding; heterocyclic compound binding
arogenate dehydrogenase chloroplastic1278prephenate dehydrogenase activity
carrier protein chloroplastic2283ATP:ADP antiporter activity; ATP binding
flowering time control protein fpa3279
transcription initiation factor tfiid subunit partial1818
e3 ubiquitin-protein ligase keg isoform x24917protein degradation tagging activity
PREDICTED: uncharacterized protein LOC184350461524
two-component response regulator-like prr372856
isoamylase chloroplastic2769
probable u3 small nucleolar rna-associated protein 7162318S ribosomal rna processing
PREDICTED: uncharacterized protein LOC1034935681407metal ion binding;sequence-specific DNA binding transcription factor activity
calcium-transporting atpase plasma membrane-type-like isoform x13192calcium-transporting ATPase activity; calmodulin binding; ATP binding; metal ion binding
protein notum homolog1263
PREDICTED: uncharacterized protein LOC1046077011380
clathrin assembly protein at5g3520016441-phosphatidylinositol binding; clathrin binding
PREDICTED: kanadaptin2274
family 18 glycoside hydrolase1236chitinase activity; chitin binding
dead-box atp-dependent rna helicase 131176
probable inactive purple acid phosphatase 271977acid phosphatase activity; metal ion binding; dephosphorylation
arginine decarboxylase2283carboxy-lyase activity
PREDICTED: uncharacterized protein LOC1045915361626
erythronate-4-phosphate dehydrogenase-like protein975
interferon-induced guanylate-binding protein 2-like3207GTPase activity; GTP binding
nf-x1-type zinc finger protein nfxl14290metal ion binding
transmembrane protein 87b-like1560
fructokinase-like chloroplastic1644kinase activity; phosphotransferase activity, alcohol group as acceptor
bel1-like homeodomain protein 12517DNA binding
cbs domain-containing protein cbsx61311
duf21 domain-containing protein at4g142401623
probable wrky transcription factor 141431
myeloid leukemia factor 1-like isoform x21059
mannose-1-phosphate guanylyltransferase 1948
phytoene synthase chloroplastic1308geranylgeranyl-diphosphate geranylgeranyltransferase activity; phytoene synthase activity
unknown336
PREDICTED: myosin-10-like1803
universal stress protein a-like protein366
PREDICTED: uncharacterized protein LOC104602728966