Table 1 SMRT sequencing and assembly statistics
Sn4Sn2000Sn79-1087
Sequencing reads485,091366,428354,610
Total sequenced bases5,400,955,1645,484,796,3335,359,857,877
Average read length11,13414,96815,115
Nuclear contigs242422
Nuclear contigs with both telomeres211920
Nuclear genome (bp)37,694,86837,459,37534,991,254
Mitochondrial genome (bp)75,09268,58968,282
L50 (contigs)a998
L90 (contigs)b202019
N50 (bp)c1,657,1531,711,9731,583,228
N90 (bp)d1,090,0351,118,7961,122,469
  • a Smallest number of contigs whose length equals 50% of the genome assembly.

  • b Smallest number of contigs whose length equals 90% of the genome assembly.

  • c Length of the smallest contig in an ordered set of contigs corresponding to 50% of the assembly length.

  • d Length of the smallest contig in an ordered set of contigs corresponding to 90% of the assembly length.