Table 3 Assessment of proteome completeness (%) using DOGMA and BUSCO approaches
Approach/domainDF HQDF AllPT HQCPT HQ AllPL HQCPL HQ AllPA MCPA HC
DOGMA
 CDA Found1464774149344525741580550
 CDA Found227247197229280431141287
 CDA Found31722914011512324229188
 Total Found CDA908153628668892814147501025
 Total % completeness4576143446703751
BUSCO
 Complete299523216321466593107455
 Single18435516123638346876318
 Multi11516855858312531137
 Fragment203283144193148188242230
 Missing93863410809268266591091755
  • DOGMA is the 965 single-domain CDAs and 1052 multiple-domain CDAs (Conserved Domain Arrangements) across eukaryotes and BUSCO is the Benchmarking Universal Single-Copy Orthologs. Explanation of headings: DF, Douglas-fir; PT, Pinus taeda; PL, Pinus lambertiana; PA, Picea abies; HQ, High Quality; HQC, High-Quality Complete; MC, Medium Content; HC, High Content.