Table 1 List of SNPs detected as significant with BayeScan in a comparison between spring and winter peas
SNPLinkage GroupPosition (cM)FSTDq-ValueAnnotation
PsCam040463537.80.80.740.019C2H2 Zinc Finger
PsCam002784538.80.850.770.003Protein of unknown function DUF3741
PsCam030915541.10.750.570.048Putative nitrate transporter NRT1-3
PsCam0001725450.780.630.039Oxoglutarate/iron-dependent oxygenase
PsCam051352553.60.830.770.009Photosystem II oxygen evolving complex protein PsbP
PsCam048068556.90.830.790.006Serine/threonine/tyrosine-protein kinase
PsCam050465556.90.820.780.007Putative aldose reductase-related protein
PsCam051635558.60.850.790.003Putative uncharacterized protein
PsCam040405559.10.700.710.045Phosphatidylethanolamine-binding protein PEBP
PsCam011361560.20.850.800.004Disease resistance?
PsCam012913560.20.770.740.028DNA cross-link repair protein
PsCam035714560.20.860.810.001LRR receptor-like serine/threonine-protein kinase
PsCam049838560.20.830.750.008Serine/threonine protein kinase-like protein
PsCam0379565610.830.800.007BRO1 domain-containing protein BROX
PsCam0396445610.750.760.017Zinc finger, C3HC4 RING-type
PsCam0422225610.890.820.001Translation initiation factor
PsCam012545561.40.770.770.014
PsCam031425567.30.780.770.018Bowman-Birk type proteinase inhibitor, Nodule expressed
PsCam048258567.30.750.750.021Probable serine/threonine-protein kinase
PsCam051833567.30.780.780.010Putative uncharacterized protein
PsCam058084568.10.700.720.023Zinc finger, LIM-type
PsCam042782568.30.750.750.025Flap endonuclease GEN-like
PsCam014128571.70.830.790.005LRR kinase
PsCam017406571.90.750.740.032
PsCam038489586.20.750.550.036Dof Zinc finger protein
PsCam028287646.90.770.650.043Nuclear transcription factor Y subunit?
PsCam006662647.40.800.660.015YTH domain; evolutionarily conserved C-terminal region
PsCam022275647.40.820.710.011Putative retroelement polyprotein
PsCam004890649.10.790.610.034Heat shock protein Hsp20
PsCam023246649.10.790.640.030BAHD acyltransferase
PsCam037030649.10.770.610.038CBF-like protein CRT binding factor 1 CRT/DRE binding factor Drought responsive element binding protein 1
PsCam037082649.10.790.690.027SET domain
PsCam057485649.10.820.630.013Pyruvate kinase
  • Indicated is their position as well as FST and Jost’s D values and the associated q-value.