Table 2 Candidate regions identified at LOD peaks
LOD Peak No.ChromosomePeak PositionCredible Interval StartCredible Interval EndSpan (kb)GenesSelection Type
1X125200012370001339000102CG11417, CG11418, CG11448, CG12773, CG14770, CG14773, CG3056, CG32813, CG3719, SNF1A, futsch, png3
2X13237000132110001325000039CG15747, IP3K2, Jafrac1, RpS15Aa2
32L15150001476000155900083CG14351, CG18131, CG18132, CG31661, CG31926, CG31928, CG33128, CG7420, Or22a, Or22b, halo2
42L131590001331600013438000122CG10859, CG16826, CG16848, CG16956, CG16957, CG16970, CG31855, CG6523, CG6565, CG7099, CG7110, CG9293, CG9302, CG9305, CG9306, CG9377, CG9395, Nnp-1, RpL24, Tap42, Tehao, Vm34Ca, beta’Cop, loqs1
73R910900090610009192000131Ace, CG11686, CG15887, CG15888, CG32473, CG8449, CG8630, CG8773, CG8774, CG8784, CG8790, CG8795, CheA87a, Lip3, Osi22, Ravus, Su(var)3-7, mthl12, poly, wntD2
83R96080009601000963800037CG42375, CG9286, CG9288, CG9297, Cht5, Dip-B, tRNA:CR31331, tRNA:CR31588, tal-1A, tal-2A, tal-3A, tal-AA2
93R25260000252450002527100026Ptp99A2
  • Seven candidate regions showing significant difference in SNP frequency between LD and DD conditions and high score of LOD. Chromosome, positions, start and end of 90% credible interval, span, genes, and selection types (Figure 5) are given for each region.