Table 6 The number of transcripts assembled with Cufflinks and the percentage they represent in the assembly after Cuffcompare analysis
Class CodeNo. of Transcripts%
=38,12649.75
C140.018
E31494.11
I5270.69
J23,00830.02
O25963.39
P15151.98
S2290.30
U67088.75
X7681.00
Total76,640100.00
  • Class codes described by Cuffcompare: =, exactly equal to the reference annotation; c, contained in the reference annotation; e, possible pre-mRNA molecules; I, an exon falling into a intron of the reference; j, new isoforms; o, unknown generic overlap with reference; p, possible polymerase run-on fragment; u, unknown intergenic transcript.