Table 2 Summary of RNA-Seq data obtained from B. rapa deep transcriptome using Illumina GAIIx sequencing
Pool Name/RunPool NumberNo. of TissuesTotal No. of ReadsFastq File Size (in GB)Total No. of Reads After Quality ControlAverage Read Length (bp)
s_6_1166218,642,02458162,403,886100
s_7_1260193,176,10650148,346,164100
GH_s_1160184,259,30848162,260,59989
GH_s_2160181,519,35848160,143,98889
GH_s_3160180,575,54448159,927,822100
GC_s_1266218,352,85656183,452,891100
GC_s_2266213,474,48056172,832,712100
GC_s_326696,917,8062675,331,287100
GC_s_4266212,749,37056180,334,866100
GC_s_5266223,341,41460144,237,478100
GC_s_6266201,966,15454135,778,620100
GC_s_7266201,305,34854142,418,270100
GH_s_4160166,999,24044117,413,176100
GH_s_5160213,801,16858136,508,912100
GH_s_6160216,036,90258142,306,342100
GH_s_7160203,973,23054136,831,614100
GCGH_s_1R8226,938,14860189,740,545100
Total3,354,028,4568882,550,269,17298.7
  • Pool 1 includes all 66 different tissues collected from growth chamber. Pool 2 includes all 60 different tissues collected from greenhouse and field. Pool R includes all eight tissues that failed in pool 1 and pool 2.